Literature DB >> 18500726

Locus control region mediated regulation of adult beta-globin gene expression.

Shermi Liang1, Babak Moghimi, Thomas P Yang, John Strouboulis, Jörg Bungert.   

Abstract

Many genes residing in gene clusters and expressed in a differentiation or developmental-stage specific manner are regulated by locus control regions (LCRs). These complex genetic regulatory elements are often composed of several DNAse I hypersensitive sites (HS sites) that function together to regulate the expression of several cis-linked genes. Particularly well characterized is the LCR associated with the beta-globin gene locus. The beta-globin LCR consists of five HS sites that are located upstream of the beta-like globin genes. Recent data demonstrate that the LCR is required for the association of the beta-globin gene locus with transcription foci or factories. The observation that RNA polymerase II associates with the LCR in erythroid progenitor or hematopoietic stem cells which do not express the globin genes suggests that the LCR is always in an accessible chromatin configuration during differentiation of erythroid cells. We propose that erythroid specific factors together with ubiquitous proteins mediate a change in chromatin configuration that juxtaposes the globin genes and the LCR. The proximity then facilitates the transfer of activities from the LCR to the globin genes. In this article we will discuss recent observations regarding beta-globin locus activation with a particular emphasis on LCR mediated activation of adult beta-globin gene expression. (c) 2008 Wiley-Liss, Inc.

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Year:  2008        PMID: 18500726      PMCID: PMC2696286          DOI: 10.1002/jcb.21820

Source DB:  PubMed          Journal:  J Cell Biochem        ISSN: 0730-2312            Impact factor:   4.429


  51 in total

Review 1.  Activation by locus control regions?

Authors:  F Grosveld
Journal:  Curr Opin Genet Dev       Date:  1999-04       Impact factor: 5.578

Review 2.  Control of globin gene expression during development and erythroid differentiation.

Authors:  George Stamatoyannopoulos
Journal:  Exp Hematol       Date:  2005-03       Impact factor: 3.084

3.  Proximity among distant regulatory elements at the beta-globin locus requires GATA-1 and FOG-1.

Authors:  Christopher R Vakoc; Danielle L Letting; Nele Gheldof; Tomoyuki Sawado; M A Bender; Mark Groudine; Mitchell J Weiss; Job Dekker; Gerd A Blobel
Journal:  Mol Cell       Date:  2005-02-04       Impact factor: 17.970

4.  GATA-1 forms distinct activating and repressive complexes in erythroid cells.

Authors:  Patrick Rodriguez; Edgar Bonte; Jeroen Krijgsveld; Katarzyna E Kolodziej; Boris Guyot; Albert J R Heck; Paresh Vyas; Ernie de Boer; Frank Grosveld; John Strouboulis
Journal:  EMBO J       Date:  2005-05-26       Impact factor: 11.598

5.  Synergistic and additive properties of the beta-globin locus control region (LCR) revealed by 5'HS3 deletion mutations: implication for LCR chromatin architecture.

Authors:  Xiangdong Fang; Jin Sun; Ping Xiang; Man Yu; Patrick A Navas; Kenneth R Peterson; George Stamatoyannopoulos; Qiliang Li
Journal:  Mol Cell Biol       Date:  2005-08       Impact factor: 4.272

6.  Activator-mediated recruitment of the MLL2 methyltransferase complex to the beta-globin locus.

Authors:  Celina Demers; Chandra-Prakash Chaturvedi; Jeffrey A Ranish; Gaetan Juban; Patrick Lai; Francois Morle; Ruedi Aebersold; F Jeffrey Dilworth; Mark Groudine; Marjorie Brand
Journal:  Mol Cell       Date:  2007-08-17       Impact factor: 17.970

7.  The binding of the ubiquitous transcription factor Sp1 at the locus control region represses the expression of beta-like globin genes.

Authors:  Dongxiao Feng; Yuet Wai Kan
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-05       Impact factor: 11.205

8.  Beta-globin active chromatin Hub formation in differentiating erythroid cells and in p45 NF-E2 knock-out mice.

Authors:  Jurgen Kooren; Robert-Jan Palstra; Petra Klous; Erik Splinter; Marieke von Lindern; Frank Grosveld; Wouter de Laat
Journal:  J Biol Chem       Date:  2007-04-11       Impact factor: 5.157

9.  Long-range chromosomal interactions regulate the timing of the transition between poised and active gene expression.

Authors:  Douglas Vernimmen; Marco De Gobbi; Jacqueline A Sloane-Stanley; William G Wood; Douglas R Higgs
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  19 in total

1.  USF and NF-E2 cooperate to regulate the recruitment and activity of RNA polymerase II in the beta-globin gene locus.

Authors:  Zhuo Zhou; Xingguo Li; Changwang Deng; Paul A Ney; Suming Huang; Jörg Bungert
Journal:  J Biol Chem       Date:  2010-03-17       Impact factor: 5.157

Review 2.  Phase Separation and Transcription Regulation: Are Super-Enhancers and Locus Control Regions Primary Sites of Transcription Complex Assembly?

Authors:  Aishwarya Gurumurthy; Yong Shen; Eliot M Gunn; Jörg Bungert
Journal:  Bioessays       Date:  2018-11-30       Impact factor: 4.345

Review 3.  Role of helix-loop-helix proteins during differentiation of erythroid cells.

Authors:  Archana Anantharaman; I-Ju Lin; Joeva Barrow; Shermi Y Liang; Jude Masannat; John Strouboulis; Suming Huang; Jörg Bungert
Journal:  Mol Cell Biol       Date:  2011-01-31       Impact factor: 4.272

4.  Ikaros and GATA-1 combinatorial effect is required for silencing of human gamma-globin genes.

Authors:  Stefania Bottardi; Julie Ross; Vincent Bourgoin; Nasser Fotouhi-Ardakani; El Bachir Affar; Marie Trudel; Eric Milot
Journal:  Mol Cell Biol       Date:  2008-12-29       Impact factor: 4.272

5.  Fetal hemoglobin in sickle cell anemia: genome-wide association studies suggest a regulatory region in the 5' olfactory receptor gene cluster.

Authors:  Nadia Solovieff; Jacqueline N Milton; Stephen W Hartley; Richard Sherva; Paola Sebastiani; Daniel A Dworkis; Elizabeth S Klings; Lindsay A Farrer; Melanie E Garrett; Allison Ashley-Koch; Marilyn J Telen; Supan Fucharoen; Shau Yin Ha; Chi-Kong Li; David H K Chui; Clinton T Baldwin; Martin H Steinberg
Journal:  Blood       Date:  2009-12-16       Impact factor: 22.113

6.  Defective erythropoiesis in transgenic mice expressing dominant-negative upstream stimulatory factor.

Authors:  Shermi Y Liang; Babak Moghimi; Valerie J Crusselle-Davis; I-Ju Lin; Michael H Rosenberg; Xingguo Li; John Strouboulis; Suming Huang; Jörg Bungert
Journal:  Mol Cell Biol       Date:  2009-08-24       Impact factor: 4.272

7.  Chromatin architecture and transcription factor binding regulate expression of erythrocyte membrane protein genes.

Authors:  Laurie A Steiner; Yelena Maksimova; Vincent Schulz; Clara Wong; Debasish Raha; Milind C Mahajan; Sherman M Weissman; Patrick G Gallagher
Journal:  Mol Cell Biol       Date:  2009-08-17       Impact factor: 4.272

8.  DNA·RNA triple helix formation can function as a cis-acting regulatory mechanism at the human β-globin locus.

Authors:  Zhuo Zhou; Keith E Giles; Gary Felsenfeld
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-13       Impact factor: 11.205

9.  Age-Related Changes in DNA Methylation Associated with Shifting Th1/Th2 Balance.

Authors:  Yu Xia; Jun Yang; Guobin Wang; Chengrong Li; Qiu Li
Journal:  Inflammation       Date:  2016-12       Impact factor: 4.092

10.  Aldosterone alters the chromatin structure of the murine endothelin-1 gene.

Authors:  Amanda K Welch; I Jeanette Lynch; Michelle L Gumz; Brian D Cain; Charles S Wingo
Journal:  Life Sci       Date:  2016-01-14       Impact factor: 5.037

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