Literature DB >> 17428799

Beta-globin active chromatin Hub formation in differentiating erythroid cells and in p45 NF-E2 knock-out mice.

Jurgen Kooren1, Robert-Jan Palstra, Petra Klous, Erik Splinter, Marieke von Lindern, Frank Grosveld, Wouter de Laat.   

Abstract

Expression of the beta-globin genes proceeds from basal to exceptionally high levels during erythroid differentiation in vivo. High expression is dependent on the locus control region (LCR) and coincides with more frequent LCR-gene contacts. These contacts are established in the context of an active chromatin hub (ACH), a spatial chromatin configuration in which the LCR, together with other regulatory sequences, loops toward the active beta-globin-like genes. Here, we used recently established I/11 cells as a model system that faithfully recapitulates the in vivo erythroid differentiation program to study the molecular events that accompany and underlie ACH formation. Upon I/11 cell induction, histone modifications changed, the ACH was formed, and the beta-globin-like genes were transcribed at rates similar to those observed in vivo. The establishment of frequent LCR-gene contacts coincided with a more efficient loading of polymerase onto the beta-globin promoter. Binding of the transcription factors GATA-1 and EKLF to the locus, although previously shown to be required, was not sufficient for ACH formation. Moreover, we used knock-out mice to show that the erythroid transcription factor p45 NF-E2, which has been implicated in beta-globin gene regulation, is dispensable for beta-globin ACH formation.

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Year:  2007        PMID: 17428799     DOI: 10.1074/jbc.M701159200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  33 in total

1.  USF and NF-E2 cooperate to regulate the recruitment and activity of RNA polymerase II in the beta-globin gene locus.

Authors:  Zhuo Zhou; Xingguo Li; Changwang Deng; Paul A Ney; Suming Huang; Jörg Bungert
Journal:  J Biol Chem       Date:  2010-03-17       Impact factor: 5.157

Review 2.  Regulation and function of the NFE2 transcription factor in hematopoietic and non-hematopoietic cells.

Authors:  Jadwiga J Gasiorek; Volker Blank
Journal:  Cell Mol Life Sci       Date:  2015-02-27       Impact factor: 9.261

Review 3.  Super-enhancers: Asset management in immune cell genomes.

Authors:  Steven Witte; John J O'Shea; Golnaz Vahedi
Journal:  Trends Immunol       Date:  2015-08-12       Impact factor: 16.687

4.  Exchange of GATA factors mediates transitions in looped chromatin organization at a developmentally regulated gene locus.

Authors:  Huie Jing; Christopher R Vakoc; Lei Ying; Sean Mandat; Hongxin Wang; Xingwu Zheng; Gerd A Blobel
Journal:  Mol Cell       Date:  2008-02-01       Impact factor: 17.970

5.  CTCF-dependent enhancer-blocking by alternative chromatin loop formation.

Authors:  Chunhui Hou; Hui Zhao; Keiji Tanimoto; Ann Dean
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-12       Impact factor: 11.205

6.  Probing the dynamic organization of transcription compartments and gene loci within the nucleus of living cells.

Authors:  Deepak Kumar Sinha; Bidisha Banerjee; Shovamayee Maharana; G V Shivashankar
Journal:  Biophys J       Date:  2008-09-19       Impact factor: 4.033

7.  Chromatin architecture and transcription factor binding regulate expression of erythrocyte membrane protein genes.

Authors:  Laurie A Steiner; Yelena Maksimova; Vincent Schulz; Clara Wong; Debasish Raha; Milind C Mahajan; Sherman M Weissman; Patrick G Gallagher
Journal:  Mol Cell Biol       Date:  2009-08-17       Impact factor: 4.272

Review 8.  In the loop: long range chromatin interactions and gene regulation.

Authors:  Ann Dean
Journal:  Brief Funct Genomics       Date:  2011-01-22       Impact factor: 4.241

Review 9.  Chromatin loops in gene regulation.

Authors:  Stephan Kadauke; Gerd A Blobel
Journal:  Biochim Biophys Acta       Date:  2008-07-15

10.  TMEM8 - a non-globin gene entrapped in the globin web.

Authors:  Elena S Philonenko; Denis B Klochkov; Victoria V Borunova; Alexey A Gavrilov; Sergey V Razin; Olga V Iarovaia
Journal:  Nucleic Acids Res       Date:  2009-12       Impact factor: 16.971

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