Literature DB >> 21057663

Fluxes of non-interacting and strongly repelling particles through a single conical channel: Analytical results and their numerical tests.

Alexander M Berezhkovskii1, Mark A Pustovoit, Sergey M Bezrukov.   

Abstract

Using a diffusion model of particle dynamics in the channel, we study entropic effects in channel-facilitated transport. We derive general expressions for the fluxes of non-interacting particles and particles that strongly repel each other through the channel of varying cross section area, assuming that the transport is driven by the difference in particle concentrations on the two sides of the membrane. For a special case of a right truncated cone expanding in the left-to-right direction, we show how the fluxes depend on the geometric parameters of the channel and on the particle concentrations. For non-interacting particles the flux is direction-independent in the sense that inversion of the concentration difference leads to the inversion of the direction of the flux without changing its magnitude. This symmetry is broken for repelling particles: The flux in the left-to-right direction exceeds its right-to-left counterpart. Our theoretical predictions are supported by three-dimensional Brownian dynamics simulations.

Entities:  

Year:  2010        PMID: 21057663      PMCID: PMC2968752          DOI: 10.1016/j.chemphys.2010.04.040

Source DB:  PubMed          Journal:  Chem Phys        ISSN: 0301-0104            Impact factor:   2.348


  25 in total

1.  Kinetic equations for diffusion in the presence of entropic barriers.

Authors:  D Reguera; J M Rubí
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2001-11-21

2.  Diffusion in a tube of varying cross section: numerical study of reduction to effective one-dimensional description.

Authors:  A M Berezhkovskii; M A Pustovoit; S M Bezrukov
Journal:  J Chem Phys       Date:  2007-04-07       Impact factor: 3.488

3.  Diffusion model of solute dynamics in a membrane channel: mapping onto the two-site model and optimizing the flux.

Authors:  Sergey M Bezrukov; Alexander M Berezhkovskii; Attila Szabo
Journal:  J Chem Phys       Date:  2007-09-21       Impact factor: 3.488

Review 4.  Diffusion in confined geometries.

Authors:  P Sekhar Burada; Peter Hänggi; Fabio Marchesoni; Gerhard Schmid; Peter Talkner
Journal:  Chemphyschem       Date:  2009-01-12       Impact factor: 3.102

Review 5.  Nanopore analytics: sensing of single molecules.

Authors:  Stefan Howorka; Zuzanna Siwy
Journal:  Chem Soc Rev       Date:  2009-06-15       Impact factor: 54.564

6.  Entropic transport: a test bed for the Fick-Jacobs approximation.

Authors:  P Sekhar Burada; Gerhard Schmid; Peter Hänggi
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2009-08-28       Impact factor: 4.226

7.  Rectification in synthetic conical nanopores: a one-dimensional Poisson-Nernst-Planck model.

Authors:  I D Kosińska; I Goychuk; M Kostur; G Schmid; P Hänggi
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-03-26

8.  Effects of jamming on nonequilibrium transport times in nanochannels.

Authors:  A Zilman; J Pearson; G Bel
Journal:  Phys Rev Lett       Date:  2009-09-17       Impact factor: 9.161

9.  Glycerol conductance and physical asymmetry of the Escherichia coli glycerol facilitator GlpF.

Authors:  Deyu Lu; Paul Grayson; Klaus Schulten
Journal:  Biophys J       Date:  2003-11       Impact factor: 4.033

10.  Efficiency, selectivity, and robustness of nucleocytoplasmic transport.

Authors:  Anton Zilman; Stefano Di Talia; Brian T Chait; Michael P Rout; Marcelo O Magnasco
Journal:  PLoS Comput Biol       Date:  2007-07       Impact factor: 4.475

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  3 in total

1.  Communication: Turnover behavior of effective mobility in a tube with periodic entropy potential.

Authors:  Leonardo Dagdug; Alexander M Berezhkovskii; Yurii A Makhnovskii; Vladimir Yu Zitserman; Sergey M Bezrukov
Journal:  J Chem Phys       Date:  2011-03-14       Impact factor: 3.488

Review 2.  Obstructing toxin pathways by targeted pore blockage.

Authors:  Ekaterina M Nestorovich; Sergey M Bezrukov
Journal:  Chem Rev       Date:  2012-10-11       Impact factor: 60.622

3.  Kinetics and thermodynamics of binding reactions as exemplified by anthrax toxin channel blockage with a cationic cyclodextrin derivative.

Authors:  Ekaterina M Nestorovich; Vladimir A Karginov; Alexander M Berezhkovskii; V Adrian Parsegian; Sergey M Bezrukov
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-24       Impact factor: 11.205

  3 in total

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