Literature DB >> 18442256

Two separate one-electron steps in the reductive activation of the A cluster in subunit beta of the ACDS complex in Methanosarcina thermophila.

Simonida Gencic1, David A Grahame.   

Abstract

Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex found in methanogens and certain other Archaea that carries out the overall synthesis and cleavage of the acetyl C-C and C-S bonds of acetyl-CoA. The reaction is involved both in the autotrophic fixation of carbon and in the process of methanogenesis from acetate, and takes place at a unique active site metal center known as the A cluster, located on the beta subunit of the ACDS complex and composed of a binuclear Ni-Ni site bridged by a cysteine thiolate to an Fe4S4 center. In this work, a high rate of acetyl-CoA synthesis was achieved with the recombinant ACDS beta subunit by use of methylcobinamide as an appropriate mimic of the physiological base-off corrinoid substrate. The redox dependence of acetyl-CoA synthesis exhibited one-electron Nernst behavior, and the effects of pH on the observed midpoint potential indicated that reductive activation of the A cluster also involves protonation. Initial burst kinetic studies indicated the formation of stoichiometric amounts of an A cluster-acetyl adduct, further supported by direct chromatographic isolation of an active enzyme-acetyl species. Titration experiments indicated that two electrons are required for activation of the enzyme in the process of forming the enzyme-acetyl intermediate. The results also established that the A cluster-acetyl species undergoes reductive elimination of the acetyl group with the simultaneous release of two, low potential electron equivalents. Thus, the one-electron Nernst behavior can be interpreted as the sum of two separate, low potential, one-electron steps. The results tend to exclude reaction mechanisms involving either one- or three-electron reduced forms of the A cluster as immediate precursors to the acetyl species. A scheme involving a [Fe4S4]1+-Ni1+ species is favored over a [Fe4S4]2+-Ni0 form. The role of proton uptake in the possible formation of a Ni2+-hydride intermediate is also discussed. Trapping of electrons during the formation of the A cluster-acetyl species from substrates CO and methylcobinamide was found to be highly favorable, thus presenting a means for extensive activation of the enzyme under otherwise nonpermissive physiological redox potentials.

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Year:  2008        PMID: 18442256     DOI: 10.1021/bi7024035

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  15 in total

Review 1.  Acetogenesis and the Wood-Ljungdahl pathway of CO(2) fixation.

Authors:  Stephen W Ragsdale; Elizabeth Pierce
Journal:  Biochim Biophys Acta       Date:  2008-08-27

2.  X-ray Absorption Spectroscopy Reveals an Organometallic Ni-C Bond in the CO-Treated Form of Acetyl-CoA Synthase.

Authors:  Mehmet Can; Logan J Giles; Stephen W Ragsdale; Ritimukta Sarangi
Journal:  Biochemistry       Date:  2017-02-23       Impact factor: 3.162

Review 3.  Metal-metal bonds in biology.

Authors:  Paul A Lindahl
Journal:  J Inorg Biochem       Date:  2011-08-26       Impact factor: 4.155

Review 4.  Metal centers in the anaerobic microbial metabolism of CO and CO2.

Authors:  Güneş Bender; Elizabeth Pierce; Jeffrey A Hill; Joseph E Darty; Stephen W Ragsdale
Journal:  Metallomics       Date:  2011-06-06       Impact factor: 4.526

5.  Tight coupling of partial reactions in the acetyl-CoA decarbonylase/synthase (ACDS) multienzyme complex from Methanosarcina thermophila: acetyl C-C bond fragmentation at the a cluster promoted by protein conformational changes.

Authors:  Simonida Gencic; Evert C Duin; David A Grahame
Journal:  J Biol Chem       Date:  2010-03-04       Impact factor: 5.157

Review 6.  Fundamentals of methanogenic pathways that are key to the biomethanation of complex biomass.

Authors:  James G Ferry
Journal:  Curr Opin Biotechnol       Date:  2011-05-17       Impact factor: 9.740

7.  Evidence that ferredoxin interfaces with an internal redox shuttle in Acetyl-CoA synthase during reductive activation and catalysis.

Authors:  Güneş Bender; Stephen W Ragsdale
Journal:  Biochemistry       Date:  2010-12-21       Impact factor: 3.162

8.  Novel domain arrangement in the crystal structure of a truncated acetyl-CoA synthase from Moorella thermoacetica.

Authors:  Anne Volbeda; Claudine Darnault; Xiangshi Tan; Paul A Lindahl; Juan C Fontecilla-Camps
Journal:  Biochemistry       Date:  2009-08-25       Impact factor: 3.162

9.  Diverse Energy-Conserving Pathways in Clostridium difficile: Growth in the Absence of Amino Acid Stickland Acceptors and the Role of the Wood-Ljungdahl Pathway.

Authors:  Simonida Gencic; David A Grahame
Journal:  J Bacteriol       Date:  2020-09-23       Impact factor: 3.490

10.  Dinuclear nickel complexes modeling the structure and function of the acetyl CoA synthase active site.

Authors:  Mikinao Ito; Mai Kotera; Tsuyoshi Matsumoto; Kazuyuki Tatsumi
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-07       Impact factor: 11.205

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