Literature DB >> 22119810

Metal-metal bonds in biology.

Paul A Lindahl1.   

Abstract

Nickel-containing carbon monoxide dehydrogenases, acetyl-CoA synthases, nickel-iron hydrogenases, and diron hydrogenases are distinct metalloenzymes yet they share a number of important characteristics. All are O(2)-sensitive, with active-sites composed of iron and/or nickel ions coordinated primarily by sulfur ligands. In each case, two metals are juxtaposed at the "heart" of the active site, within range of forming metal-metal bonds. These active-site clusters exhibit multielectron redox abilities and must be reductively activated for catalysis. Reduction potentials are milder than expected based on formal oxidation state changes. When reductively activated, each cluster attacks an electrophilic substrate via an oxidative addition reaction. This affords a two-electron-reduced substrate bound to one or both metals of an oxidized cluster. M-M bonds have been established in hydrogenases where they serve to initiate the oxidative addition of protons and perhaps stabilize active sites in multiple redox states. The same may be true of the CODH and ACS active sites-Ni-Fe and Ni-Ni bonds in these sites may play critical roles in catalysis, stabilizing low-valence states and initiating oxidative addition of CO(2) and methyl group cations, respectively. In this article, the structural and functional commonalities of these metalloenzyme active sites are described, and the case is made for the formation and use of metal-metal bonds in each enzyme mentioned. As a post-script, the importance of Fe-Fe bonds in the nitrogenase FeMoco active site is discussed.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 22119810      PMCID: PMC3232296          DOI: 10.1016/j.jinorgbio.2011.08.012

Source DB:  PubMed          Journal:  J Inorg Biochem        ISSN: 0162-0134            Impact factor:   4.155


  53 in total

1.  Nitrogenase MoFe-protein at 1.16 A resolution: a central ligand in the FeMo-cofactor.

Authors:  Oliver Einsle; F Akif Tezcan; Susana L A Andrade; Benedikt Schmid; Mika Yoshida; James B Howard; Douglas C Rees
Journal:  Science       Date:  2002-09-06       Impact factor: 47.728

2.  A quantum chemical study of the reaction mechanism of acetyl-coenzyme a synthase.

Authors:  Patricia Amara; Anne Volbeda; Juan Carlos Fontecilla-Camps; Martin J Field
Journal:  J Am Chem Soc       Date:  2005-03-02       Impact factor: 15.419

Review 3.  Structural and functional analogues of the active sites of the [Fe]-, [NiFe]-, and [FeFe]-hydrogenases.

Authors:  Cédric Tard; Christopher J Pickett
Journal:  Chem Rev       Date:  2009-06       Impact factor: 60.622

4.  Spectroelectrochemical characterization of the active site of the [FeFe] hydrogenase HydA1 from Chlamydomonas reinhardtii.

Authors:  Alexey Silakov; Christina Kamp; Eduard Reijerse; Thomas Happe; Wolfgang Lubitz
Journal:  Biochemistry       Date:  2009-08-25       Impact factor: 3.162

5.  Modulation of the electronic structure and the Ni-Fe distance in heterobimetallic models for the active site in [NiFe]hydrogenase.

Authors:  Wenfeng Zhu; Andrew C Marr; Qiang Wang; Frank Neese; Douglas J E Spencer; Alexander J Blake; Paul A Cooke; Claire Wilson; Martin Schröder
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-13       Impact factor: 11.205

6.  Mechanism of hydrogen evolution catalyzed by NiFe hydrogenases: insights from a Ni-Ru model compound.

Authors:  Loredana Vaccaro; Vincent Artero; Sigolène Canaguier; Marc Fontecave; Martin J Field
Journal:  Dalton Trans       Date:  2009-12-14       Impact factor: 4.390

7.  Spectroscopic states of the CO oxidation/CO2 reduction active site of carbon monoxide dehydrogenase and mechanistic implications.

Authors:  M E Anderson; P A Lindahl
Journal:  Biochemistry       Date:  1996-06-25       Impact factor: 3.162

Review 8.  Nickel and the carbon cycle.

Authors:  Stephen W Ragsdale
Journal:  J Inorg Biochem       Date:  2007-07-21       Impact factor: 4.155

9.  Carbon dioxide activation at the Ni,Fe-cluster of anaerobic carbon monoxide dehydrogenase.

Authors:  Jae-Hun Jeoung; Holger Dobbek
Journal:  Science       Date:  2007-11-30       Impact factor: 47.728

10.  Computational studies on the A cluster of acetyl-coenzyme A synthase: geometric and electronic properties of the NiFeC species and mechanistic implications.

Authors:  Ralph P Schenker; Thomas C Brunold
Journal:  J Am Chem Soc       Date:  2003-11-19       Impact factor: 15.419

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  16 in total

1.  Hydrogens detected by subatomic resolution protein crystallography in a [NiFe] hydrogenase.

Authors:  Hideaki Ogata; Koji Nishikawa; Wolfgang Lubitz
Journal:  Nature       Date:  2015-01-26       Impact factor: 49.962

2.  Spin States, Bonding and Magnetism in Mixed-Valence Iron(0)-Iron(II) Complexes.

Authors:  Daniel Kim; Daniel W N Wilson; Majed S Fataftah; Brandon Q Mercado; Patrick L Holland
Journal:  Chemistry       Date:  2022-01-12       Impact factor: 5.236

3.  A reversible electron-bifurcating ferredoxin- and NAD-dependent [FeFe]-hydrogenase (HydABC) in Moorella thermoacetica.

Authors:  Shuning Wang; Haiyan Huang; Jörg Kahnt; Rudolf K Thauer
Journal:  J Bacteriol       Date:  2013-01-11       Impact factor: 3.490

4.  NADP-specific electron-bifurcating [FeFe]-hydrogenase in a functional complex with formate dehydrogenase in Clostridium autoethanogenum grown on CO.

Authors:  Shuning Wang; Haiyan Huang; Jörg Kahnt; Alexander P Mueller; Michael Köpke; Rudolf K Thauer
Journal:  J Bacteriol       Date:  2013-07-26       Impact factor: 3.490

5.  Evidence for a hexaheteromeric methylenetetrahydrofolate reductase in Moorella thermoacetica.

Authors:  Johanna Mock; Shuning Wang; Haiyan Huang; Jörg Kahnt; Rudolf K Thauer
Journal:  J Bacteriol       Date:  2014-07-07       Impact factor: 3.490

6.  Copper-, palladium-, and platinum-containing complexes of an asymmetric dinucleating ligand.

Authors:  Mohammad Reza Halvagar; Benjamin Neisen; William B Tolman
Journal:  Inorg Chem       Date:  2012-12-26       Impact factor: 5.165

7.  Electron bifurcation involved in the energy metabolism of the acetogenic bacterium Moorella thermoacetica growing on glucose or H2 plus CO2.

Authors:  Haiyan Huang; Shuning Wang; Johanna Moll; Rudolf K Thauer
Journal:  J Bacteriol       Date:  2012-05-11       Impact factor: 3.490

8.  Mechanisms of Nickel-Catalyzed Coupling Reactions and Applications in Alkene Functionalization.

Authors:  Justin Diccianni; Qiao Lin; Tianning Diao
Journal:  Acc Chem Res       Date:  2020-04-02       Impact factor: 22.384

9.  Chemical Bonding in Homoleptic Carbonyl Cations [M{Fe(CO)5 }2 ]+ (M=Cu, Ag, Au).

Authors:  Sudip Pan; Sai Manoj N V T Gorantla; Devaborniny Parasar; H V Rasika Dias; Gernot Frenking
Journal:  Chemistry       Date:  2021-03-16       Impact factor: 5.236

Review 10.  Early bioenergetic evolution.

Authors:  Filipa L Sousa; Thorsten Thiergart; Giddy Landan; Shijulal Nelson-Sathi; Inês A C Pereira; John F Allen; Nick Lane; William F Martin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-06-10       Impact factor: 6.237

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