Literature DB >> 21647480

Metal centers in the anaerobic microbial metabolism of CO and CO2.

Güneş Bender1, Elizabeth Pierce, Jeffrey A Hill, Joseph E Darty, Stephen W Ragsdale.   

Abstract

Carbon dioxide and n class="Chemical">carbon monoxide are important components of the carbon cycle. Major research efforts are underway to develop better technologies to utilize the abundant greenhouse gas, CO(2), for harnessing 'green' energy and producing biofuels. One strategy is to convert CO(2) into CO, which has been valued for many years as a synthetic feedstock for major industrial processes. Living organisms are masters of CO(2) and CO chemistry and, here, we review the elegant ways that metalloenzymes catalyze reactions involving these simple compounds. After describing the chemical and physical properties of CO and CO(2), we shift focus to the enzymes and the metal clusters in their active sites that catalyze transformations of these two molecules. We cover how the metal centers on CO dehydrogenase catalyze the interconversion of CO and CO(2) and how pyruvate oxidoreductase, which contains thiamin pyrophosphate and multiple Fe(4)S(4) clusters, catalyzes the addition and elimination of CO(2) during intermediary metabolism. We also describe how the nickel center at the active site of acetyl-CoA synthase utilizes CO to generate the central metabolite, acetyl-CoA, as part of the Wood-Ljungdahl pathway, and how CO is channelled from the CO dehydrogenase to the acetyl-CoA synthase active site. We cover how the corrinoid iron-sulfur protein interacts with acetyl-CoA synthase. This protein uses vitamin B(12) and a Fe(4)S(4) cluster to catalyze a key methyltransferase reaction involving an organometallic methyl-Co(3+) intermediate. Studies of CO and CO(2) enzymology are of practical significance, and offer fundamental insights into important biochemical reactions involving metallocenters that act as nucleophiles to form organometallic intermediates and catalyze C-C and C-S bond formations.

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Year:  2011        PMID: 21647480      PMCID: PMC3964926          DOI: 10.1039/c1mt00042j

Source DB:  PubMed          Journal:  Metallomics        ISSN: 1756-5901            Impact factor:   4.526


  195 in total

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Journal:  Mol Biol Evol       Date:  1999-09       Impact factor: 16.240

2.  Nickel in subunit beta of the acetyl-CoA decarbonylase/synthase multienzyme complex in methanogens. Catalytic properties and evidence for a binuclear Ni-Ni site.

Authors:  Simonida Gencic; David A Grahame
Journal:  J Biol Chem       Date:  2002-12-02       Impact factor: 5.157

3.  Reaction of the molybdenum- and copper-containing carbon monoxide dehydrogenase from Oligotropha carboxydovorans with quinones.

Authors:  Jarett Wilcoxen; Bo Zhang; Russ Hille
Journal:  Biochemistry       Date:  2011-02-16       Impact factor: 3.162

4.  Structure of the alpha2epsilon2 Ni-dependent CO dehydrogenase component of the Methanosarcina barkeri acetyl-CoA decarbonylase/synthase complex.

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Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-09       Impact factor: 11.205

5.  Cloning and expression of the gene cluster encoding key proteins involved in acetyl-CoA synthesis in Clostridium thermoaceticum: CO dehydrogenase, the corrinoid/Fe-S protein, and methyltransferase.

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Journal:  Proc Natl Acad Sci U S A       Date:  1989-01       Impact factor: 11.205

6.  Sulfido-bridged dinuclear molybdenum-copper complexes related to the active site of CO dehydrogenase: [(dithiolate)Mo(O)S2Cu(SAr)]2- (dithiolate = 1,2-S2C6H4, 1,2-S2C6H2-3,6-Cl2, 1,2-S2C2H4).

Authors:  Motoki Takuma; Yasuhiro Ohki; Kazuyuki Tatsumi
Journal:  Inorg Chem       Date:  2005-08-22       Impact factor: 5.165

7.  Direct electrochemical studies of hydrogenase and CO dehydrogenase.

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Journal:  Biochem J       Date:  1992-07-01       Impact factor: 3.857

Review 8.  CO as a cellular signaling molecule.

Authors:  Hong Pyo Kim; Stefan W Ryter; Augustine M K Choi
Journal:  Annu Rev Pharmacol Toxicol       Date:  2006       Impact factor: 13.820

9.  Reisolation of the carbon monoxide utilizing hydrogen bacterium Pseudomonas carboxydovorans (Kistner) comb. nov.

Authors:  O Meyer; H G Schlegel
Journal:  Arch Microbiol       Date:  1978-07       Impact factor: 2.552

10.  Purification of five components from Clostridium thermoaceticum which catalyze synthesis of acetate from pyruvate and methyltetrahydrofolate. Properties of phosphotransacetylase.

Authors:  H L Drake; S I Hu; H G Wood
Journal:  J Biol Chem       Date:  1981-11-10       Impact factor: 5.157

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  16 in total

1.  Heterologous Expression of the Clostridium carboxidivorans CO Dehydrogenase Alone or Together with the Acetyl Coenzyme A Synthase Enables both Reduction of CO2 and Oxidation of CO by Clostridium acetobutylicum.

Authors:  Ellinor D Carlson; Eleftherios T Papoutsakis
Journal:  Appl Environ Microbiol       Date:  2017-08-01       Impact factor: 4.792

Review 2.  Investigations of the efficient electrocatalytic interconversions of carbon dioxide and carbon monoxide by nickel-containing carbon monoxide dehydrogenases.

Authors:  Vincent C-C Wang; Stephen W Ragsdale; Fraser A Armstrong
Journal:  Met Ions Life Sci       Date:  2014

3.  Complementation of Cobalamin Auxotrophy in Synechococcus sp. Strain PCC 7002 and Validation of a Putative Cobalamin Riboswitch In Vivo.

Authors:  Adam A Pérez; Zhenfeng Liu; Dmitry A Rodionov; Zhongkui Li; Donald A Bryant
Journal:  J Bacteriol       Date:  2016-09-09       Impact factor: 3.490

4.  Evidence for a hexaheteromeric methylenetetrahydrofolate reductase in Moorella thermoacetica.

Authors:  Johanna Mock; Shuning Wang; Haiyan Huang; Jörg Kahnt; Rudolf K Thauer
Journal:  J Bacteriol       Date:  2014-07-07       Impact factor: 3.490

5.  Spectroscopic characterization and mechanistic investigation of P-methyl transfer by a radical SAM enzyme from the marine bacterium Shewanella denitrificans OS217.

Authors:  Kylie D Allen; Susan C Wang
Journal:  Biochim Biophys Acta       Date:  2014-09-16

6.  AcsF Catalyzes the ATP-dependent Insertion of Nickel into the Ni,Ni-[4Fe4S] Cluster of Acetyl-CoA Synthase.

Authors:  Christina M Gregg; Sebastian Goetzl; Jae-Hun Jeoung; Holger Dobbek
Journal:  J Biol Chem       Date:  2016-07-05       Impact factor: 5.157

7.  Investigations by Protein Film Electrochemistry of Alternative Reactions of Nickel-Containing Carbon Monoxide Dehydrogenase.

Authors:  Vincent C-C Wang; Shams T A Islam; Mehmet Can; Stephen W Ragsdale; Fraser A Armstrong
Journal:  J Phys Chem B       Date:  2015-07-15       Impact factor: 2.991

8.  Investigations of two bidirectional carbon monoxide dehydrogenases from Carboxydothermus hydrogenoformans by protein film electrochemistry.

Authors:  Vincent C-C Wang; Stephen W Ragsdale; Fraser A Armstrong
Journal:  Chembiochem       Date:  2013-09-03       Impact factor: 3.164

Review 9.  Early bioenergetic evolution.

Authors:  Filipa L Sousa; Thorsten Thiergart; Giddy Landan; Shijulal Nelson-Sathi; Inês A C Pereira; John F Allen; Nick Lane; William F Martin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-06-10       Impact factor: 6.237

10.  Axial Ligation and Redox Changes at the Cobalt Ion in Cobalamin Bound to Corrinoid Iron-Sulfur Protein (CoFeSP) or in Solution Characterized by XAS and DFT.

Authors:  Peer Schrapers; Stefan Mebs; Sebastian Goetzl; Sandra E Hennig; Holger Dau; Holger Dobbek; Michael Haumann
Journal:  PLoS One       Date:  2016-07-06       Impact factor: 3.240

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