Literature DB >> 9799667

Model-free analysis of stretched relaxation dispersions.

B Halle1, H Jóhannesson, K Venu.   

Abstract

Nuclear magnetic relaxation dispersion (NMRD) measurements can provide valuable information about the dynamics and structure of macromolecular solutions and other complex fluids. A large number of 1H NMRD studies of water in concentrated protein solutions and in semisolid biological samples have been reported. The observed dispersion usually extends over a wide frequency range and then cannot be described by a Lorentzian spectral density function. We propose here a model-free approach for analyzing such stretched dispersion profiles. Unlike the traditional empirical fitting procedures, the model-free approach is based on rigorous theory and produces parameters with well-defined physical significance. The model-free approach is validated with the aid of synthetic relaxation data, showing that it is robust and accurate, and is then applied to new water 1H NMRD data from solutions of the protein bovine pancreatic trypsin inhibitor (BPTI). By separating the static and dynamic information content of the relaxation dispersion, the model-free analysis shows that the dramatic salt effect observed in BPTI solutions is due almost entirely to a slowing down of protein rotation with little change of protein structure. An analysis of the same data in terms of the empirical dispersion function used in most 1H NMRD studies leads to a qualitatively different picture. We demonstrate that this widely used dispersion function is unphysical and that its parameters do not have the physical meaning usually ascribed to them. Copyright 1998 Academic Press.

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Year:  1998        PMID: 9799667     DOI: 10.1006/jmre.1998.1534

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  15 in total

1.  Protein self-association in solution: the bovine beta -lactoglobulin dimer and octamer.

Authors:  Michael Gottschalk; Hanna Nilsson; Helena Roos; Bertil Halle
Journal:  Protein Sci       Date:  2003-11       Impact factor: 6.725

2.  Paramagnetic relaxation enhancements in unfolded proteins: theory and application to drkN SH3 domain.

Authors:  Yi Xue; Ivan S Podkorytov; D Krishna Rao; Nathan Benjamin; Honglei Sun; Nikolai R Skrynnikov
Journal:  Protein Sci       Date:  2009-07       Impact factor: 6.725

3.  The physical state of water in bacterial spores.

Authors:  Erik P Sunde; Peter Setlow; Lars Hederstedt; Bertil Halle
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-05       Impact factor: 11.205

4.  Reconstruction of the environmental evolution of a Sicilian saltmarsh (Italy).

Authors:  Antonella Maccotta; Claudio De Pasquale; Antonio Caruso; Claudia Cosentino; Giuseppe Alonzo; Pellegrino Conte
Journal:  Environ Sci Pollut Res Int       Date:  2013-01-10       Impact factor: 4.223

5.  Protein-bound water molecule counting by resolution of (1)H spin-lattice relaxation mechanisms.

Authors:  S Kiihne; R G Bryant
Journal:  Biophys J       Date:  2000-04       Impact factor: 4.033

6.  Quantitative Interpretation of Solvent Paramagnetic Relaxation for Probing Protein-Cosolute Interactions.

Authors:  Yusuke Okuno; Attila Szabo; G Marius Clore
Journal:  J Am Chem Soc       Date:  2020-04-24       Impact factor: 15.419

7.  Protein self-association in solution: the bovine pancreatic trypsin inhibitor decamer.

Authors:  Michael Gottschalk; Kandadai Venu; Bertil Halle
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

8.  Model-independent interpretation of NMR relaxation data for unfolded proteins: the acid-denatured state of ACBP.

Authors:  Kristofer Modig; Flemming M Poulsen
Journal:  J Biomol NMR       Date:  2008-10-11       Impact factor: 2.835

9.  Cell water dynamics on multiple time scales.

Authors:  Erik Persson; Bertil Halle
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-24       Impact factor: 11.205

10.  Water accessibility, aggregation, and motional features of polysaccharide-protein conjugate vaccines.

Authors:  Francesco Berti; Paolo Costantino; Marco Fragai; Claudio Luchinat
Journal:  Biophys J       Date:  2004-01       Impact factor: 4.033

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