| Literature DB >> 18433502 |
Cindy L Ehlers1, Penelope A Lind, Kirk C Wilhelmsen.
Abstract
BACKGROUND: Variation in response to the hedonic and adverse effects of a substance is in part an inherited factor that may influence its use, abuse and dependence. The mu opioid receptor is the primary site of action for opiates and individuals with polymorphisms in this receptor appear to have variation in the CNS effects of opiates. Several studies have suggested that this receptor may also mediate some of the effects of non-opioid drugs, such as alcohol. The purpose of this study was to investigate associations between 13 single nucleotide polymorphisms in the mu opioid receptor gene (OPRM1) with self-reported responses to alcohol, an endophenotype associated with the development of alcohol dependence, in American Indians living on eight contiguous reservations.Entities:
Mesh:
Substances:
Year: 2008 PMID: 18433502 PMCID: PMC2386778 DOI: 10.1186/1471-2350-9-35
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Figure 1A schematic representation of OPRM1 Gene Structure, Linkage. Disequilibrium and Genotyped SNPs. The gene structure of OPRM1 is shown with exons numbered from 1 to 4 and relative exon size denoted by the width of the vertical bars. Thirteen SNPs analyzed in this study are shown in relation to their location across OPRM1. Linkage disequilibrium (LD; shown below the gene structure) data, as measured by the correlation coefficient r2 statistic, was generated using Haploview [81]. LD causes tightly linked genetic variants to be highly correlated. Shading represents correlation magnitudes between low r2 (white) and high r2 (red).
OPRM1 marker information, including genetic map position, location within OPRM1 and minor allele frequency.
| Marker Name | Gene | Chromosomal | Functional | Alleles | MAFd | Referencese | ||||||
| dbSNP | Celera | Location | Location (bp)a | Location (bp)b | Minorc | Major | Indian | CEPH | China | Japan | Yoruba | |
| rs1799971 | hCV8950074 | Exon 1 | 154,402,490 | +118 | G | A | 0.13 | 0.17 | 0.36 | 0.49 | 0.01 | 1,2,3,4,5,6,7,8,9,10 |
| rs553202 | hCV809975 | Intron 1 | 154,406,510 | +4,138 | A | G | 0.33 | 0.20 | nd | nd | 0.41 | |
| rs524731 | hCV809963 | Intron 1 | 154,416,785 | +14,413 | A | C | 0.32 | 0.18 | 0.04 | 0.02 | 0.05 | 1,3,4 |
| rs3778148 | hCV27499812 | Intron 1 | 154,422,705 | +20,333 | T | G | 0.08 | 0.14 | 0.04 | 0.02 | 0.04 | |
| rs1461773 | hCV8949980 | Intron 1 | 154,433,062 | +30,690 | T | C | 0.16 | 0.14 | 0.04 | 0.03 | 0.08 | |
| rs506247 | hCV27335981 | Intron 1 | 154,437,620 | +35,248 | G | T | 0.21 | 0.04 | 0.00 | 0.00 | 0.01 | |
| rs563649 | hCV809947 | Intron 1 | 154,449,660 | +47,288 | A | G | 0.24 | 0.08 | 0.13 | 0.06 | 0.16 | 1 |
| rs2075572 | hCV1691815 | Intron 2 | 154,453,697 | +51,325 | G | C | 0.39 | 0.43 | 0.20 | 0.21 | 0.62 | 1,2,3,4 |
| rs548646 | hCV3073603 | Intron 3 | 154,459,840 | +57,468 | T | C | 0.18 | 0.33 | 0.07 | 0.13 | 0.46 | 1,3 |
| rs648007 | hCV1691794 | Intron 3 | 154,464,304 | +61,932 | T | C | 0.18 | 0.33 | 0.07 | 0.13 | 0.46 | 1 |
| rs681243 | hCV3073596 | Intron 3 | 154,469,434 | +67,062 | A | G | 0.18 | 0.24 | 0.06 | 0.14 | 0.43 | |
| rs648893 | hCV3073587 | Intron 3 | 154,480,321 | +77,949 | C | T | 0.11 | 0.20 | 0.05 | 0.10 | 0.04 | 1,3,4,5 |
| rs642489 | hCV3073582 | 3' UTR | 154,484,368 | +81,996 | A | C | 0.11 | 0.21 | 0.04 | 0.10 | 0.13 | |
abp = base-pair position on NCBI Genome Build 127.
bPosition relative to transcription start site at 154,402,372 on Chromosome 6 (NCBI Genome Build 127).
cThe allele with the lowest frequency.
dMAF = Minor Allele Frequency for the Indian tribes studied (Indians) and the reference populations CEPH (European), China, Japan, Yoruba (African). nd = no data.
eReports where each SNP has previously been genotyped: 1. Xuei et al., 2007 [100]; 2. D. Zhang et al., 2007 [98]; 3. H. Zhang et al., 2006 [99]; 4. L. Zhang et al., 2006 [101]; 5. Gelernter et al., 2007 [33]; 6. Luo et al., 2003 [97]; 7. Smith et al., 2005 [102]; 8. Crowley et al., 2003 [103]; 9. Shi et al., 2002 [104]; 10 Y. Zhang et al. 2005 [12].
Estimated heritability (h2) for the Subjective High Assessment Scale-Expectations (SHAS-E) phenotypes.
| Item | Trait | Mean | Std Dev | Range | Heritability | Std. Err. | p |
| 1 | Buzzed | 12.32 | 11.48 | 0–36 | 0.09 | 0.10 | 0.18 |
| 2 | Clumsy | 9.52 | 10.19 | 0–36 | 0.01 | 0.09 | 0.45 |
| 3 | Dizzy | 7.75 | 10.44 | 0–36 | 0.09 | 0.10 | 0.18 |
| 4 | Drunk | 8.27 | 10.73 | 0–36 | 0.14 | 0.10 | 0.06 |
| 5 | Effects of Alcohol | 12.15 | 11.67 | 0–36 | 0.15 | 0.11 | 0.07 |
| 6 | Energy | 9.24 | 9.45 | 0–35 | 0 | 0.50 | |
| 7 | Good | 12.33 | 10.40 | 0–36 | 0.05 | 0.10 | 0.29 |
| 8 | Great | 11.54 | 10.57 | 0–36 | 0.06 | 0.11 | 0.29 |
| 9 | High | 11.65 | 10.44 | 0–36 | 0.01 | 0.09 | 0.44 |
| 10 | Nausea | 6.0 | 9.85 | 0–36 | 0.12 | 0.11 | 0.11 |
| 11 | Sleepy | 7.20 | 9.99 | 0–36 | 0.23 | 0.12 | 0.02 |
| 12 | Talkative | 13.31 | 11.22 | 0–36 | 0.26 | 0.12 | |
| 13 | Terrible | 7.95 | 11.03 | 0–36 | 0.29 | 0.11 | |
| 14 | Uncomfortable | 9.67 | 10.06 | 0–36 | 0.05 | 0.11 | 0.31 |
| Total | 118.80 | 98.7 | 0–377 | 0.11 | 0.11 | 0.14 | |
Mean, standard deviation and range of values are given. Significant values (p < 0.01) are highlighted in bold.
Association of OPRM1 SNPs with response to alcohol, as measured by the Subjective High Assessment Scale-Expectations (SHAS-E) questionnaire. Significant values (p < 0.01) are highlighted in bold.
| Marker | Minor | Increaser | Subjective High Assessment Scale-Expectations Item | ||||||||||||||
| Allele | Allele | Buzzed | Clumsy | Dizzy | Drunk | Effects | Energy | Good | Great | High | Nausea | Sleepy | Talk | Terrible | Uncom | Total | |
| rs1799971 | G | A | 0.26 | 0.84 | 0.02 | 0.23 | 0.67 | 0.64 | 0.98 | 0.49 | 0.20 | 0.32 | 0.02 | 0.67 | 0.71 | 0.07 | 0.24 |
| rs553202 | A | A | 0.03 | 0.10 | 0.10 | 0.48 | 0.32 | 0.64 | 0.15 | 0.21 | 0.02 | ||||||
| rs524731 | A | A | 0.03 | 0.10 | 0.09 | 0.56 | 0.26 | 0.94 | 0.06 | 0.13 | 0.16 | 0.07 | 0.02 | ||||
| rs3778148 | T | T | 0.02 | 0.02 | 0.02 | 0.92 | 0.39 | 0.52 | 0.09 | 0.11 | |||||||
| rs1461773 | T | T | 0.02 | 0.03 | 0.03 | 0.94 | 0.67 | 0.60 | 0.07 | 0.08 | |||||||
| rs506247 | G | G | 0.40 | 0.95 | 0.51 | 0.06 | 0.91 | 0.58 | 0.63 | 0.55 | 0.35 | 0.44 | 0.47 | 0.48 | 0.07 | 0.83 | 0.64 |
| rs563649 | A | A | 0.73 | 0.77 | 0.56 | 0.12 | 0.70 | 0.91 | 0.73 | 0.39 | 0.84 | 0.62 | 0.58 | 0.38 | 0.06 | 0.57 | 0.91 |
| rs2075572 | G | G | 0.12 | 0.04 | 0.31 | 0.69 | 0.76 | 0.21 | 0.05 | 0.74 | 0.07 | 0.17 | 0.06 | ||||
| rs548646 | T | T | 0.02 | 0.02 | 0.12 | 0.77 | 0.91 | 0.06 | 0.02 | 0.04 | 0.03 | 0.33 | 0.02 | ||||
| rs648007 | T | T | 0.09 | 0.02 | 0.08 | 0.10 | 0.21 | 0.85 | 0.95 | 0.12 | 0.23 | 0.09 | 0.82 | 0.05 | 0.03 | ||
| rs681243 | A | A | 0.02 | 0.03 | 0.15 | 0.90 | 0.91 | 0.05 | 0.06 | 0.06 | 0.37 | 0.02 | |||||
| rs648893 | C | C | 0.51 | 0.34 | 0.37 | 0.62 | 0.45 | 0.09 | 0.85 | 0.82 | 0.78 | 0.82 | 0.60 | 0.28 | 0.42 | 0.50 | 0.41 |
| rs642489 | A | A | 0.43 | 0.25 | 0.31 | 0.55 | 0.40 | 0.09 | 0.83 | 0.80 | 0.79 | 0.71 | 0.45 | 0.28 | 0.50 | 0.55 | 0.36 |
The increaser allele for the TOTAL phenotype (i.e., the allele associated with a higher TOTAL score)
TOTAL = sum of scores reported for the first 12 SHAS-E items.