Literature DB >> 18424534

Characterization of a bacterial community in an abandoned semiarid lead-zinc mine tailing site.

Monica O Mendez1, Julia W Neilson, Raina M Maier.   

Abstract

Bacterial diversity in mine tailing microbial communities has not been thoroughly investigated despite the correlations that have been observed between the relative microbial diversity and the success of revegetation efforts at tailing sites. This study employed phylogenetic analyses of 16S rRNA genes to compare the bacterial communities present in highly disturbed, extremely (pH 2.7) and moderately (pH 5.7) acidic lead-zinc mine tailing samples from a semiarid environment with those from a vegetated off-site (OS) control sample (pH 8). Phylotype richness in these communities decreased from 42 in the OS control to 24 in the moderately acidic samples and 8 in the extremely acidic tailing samples. The clones in the extremely acidic tailing sample were most closely related to acidophiles, none of which were detected in the OS control sample. The comparison generated by this study between the bacteria present in extremely acidic tailing and that in moderately acidic tailing communities with those in an OS control soil provides a reference point from which to evaluate the successful restoration of mine tailing disposal sites by phytostabilization.

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Year:  2008        PMID: 18424534      PMCID: PMC2446573          DOI: 10.1128/AEM.02883-07

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  30 in total

1.  Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.

Authors:  T Z DeSantis; P Hugenholtz; N Larsen; M Rojas; E L Brodie; K Keller; T Huber; D Dalevi; P Hu; G L Andersen
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

2.  Cultivation-dependent and cultivation-independent characterization of the microbial community in acid mine drainage associated with acidic Pb/Zn mine tailings at Lechang, Guangdong, China.

Authors:  Gui-Liang Tan; Wen-Sheng Shu; Kevin B Hallberg; Fang Li; Chong-Yu Lan; Li-Nan Huang
Journal:  FEMS Microbiol Ecol       Date:  2006-10-24       Impact factor: 4.194

3.  Phytostabilization potential of quailbush for mine tailings: growth, metal accumulation, and microbial community changes.

Authors:  Monica O Mendez; Edward P Glenn; Raina M Maier
Journal:  J Environ Qual       Date:  2007-01-09       Impact factor: 2.751

4.  Microbiological and geochemical characterization of fluvially deposited sulfidic mine tailings

Authors: 
Journal:  Appl Environ Microbiol       Date:  1999-04       Impact factor: 4.792

5.  Differentiation and identification of iron-oxidizing acidophilic bacteria using cultivation techniques and amplified ribosomal DNA restriction enzyme analysis.

Authors:  D Barrie Johnson; Naoko Okibe; Kevin B Hallberg
Journal:  J Microbiol Methods       Date:  2005-03       Impact factor: 2.363

6.  Macroscopic streamer growths in acidic, metal-rich mine waters in north wales consist of novel and remarkably simple bacterial communities.

Authors:  Kevin B Hallberg; Kris Coupland; Sakurako Kimura; D Barrie Johnson
Journal:  Appl Environ Microbiol       Date:  2006-03       Impact factor: 4.792

7.  Cultural and phylogenetic analysis of mixed microbial populations found in natural and commercial bioleaching environments.

Authors:  B M Goebel; E Stackebrandt
Journal:  Appl Environ Microbiol       Date:  1994-05       Impact factor: 4.792

8.  At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies.

Authors:  Kevin E Ashelford; Nadia A Chuzhanova; John C Fry; Antonia J Jones; Andrew J Weightman
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

9.  NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes.

Authors:  T Z DeSantis; P Hugenholtz; K Keller; E L Brodie; N Larsen; Y M Piceno; R Phan; G L Andersen
Journal:  Nucleic Acids Res       Date:  2006-07-01       Impact factor: 16.971

10.  The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis.

Authors:  J R Cole; B Chai; R J Farris; Q Wang; S A Kulam; D M McGarrell; G M Garrity; J M Tiedje
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

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  40 in total

1.  Life at the hyperarid margin: novel bacterial diversity in arid soils of the Atacama Desert, Chile.

Authors:  Julia W Neilson; Jay Quade; Marianyoly Ortiz; William M Nelson; Antje Legatzki; Fei Tian; Michelle LaComb; Julio L Betancourt; Rod A Wing; Carol A Soderlund; Raina M Maier
Journal:  Extremophiles       Date:  2012-04-18       Impact factor: 2.395

2.  In-depth characterization via complementing culture-independent approaches of the microbial community in an acidic hot spring of the Colombian Andes.

Authors:  Laura C Bohorquez; Luisa Delgado-Serrano; Gina López; César Osorio-Forero; Vanja Klepac-Ceraj; Roberto Kolter; Howard Junca; Sandra Baena; María Mercedes Zambrano
Journal:  Microb Ecol       Date:  2011-09-27       Impact factor: 4.552

Review 3.  Is rhizosphere remediation sufficient for sustainable revegetation of mine tailings?

Authors:  Longbin Huang; Thomas Baumgartl; David Mulligan
Journal:  Ann Bot       Date:  2012-05-30       Impact factor: 4.357

4.  Molecular characterization and geological microenvironment of a microbial community inhabiting weathered receding shale cliffs.

Authors:  Charles S Cockell; David Pybus; Karen Olsson-Francis; Laura Kelly; David Petley; Nick Rosser; Kieren Howard; Fred Mosselmans
Journal:  Microb Ecol       Date:  2010-08-04       Impact factor: 4.552

5.  Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale.

Authors:  Christian L Lauber; Micah Hamady; Rob Knight; Noah Fierer
Journal:  Appl Environ Microbiol       Date:  2009-06-05       Impact factor: 4.792

6.  Effects of compost on colonization of roots of plants grown in metalliferous mine tailings, as examined by fluorescence in situ hybridization.

Authors:  Sadie L Iverson; Raina M Maier
Journal:  Appl Environ Microbiol       Date:  2008-12-01       Impact factor: 4.792

7.  Spatial and temporal analysis of the microbial community in the tailings of a Pb-Zn mine generating acidic drainage.

Authors:  Li-Nan Huang; Wen-Hua Zhou; Kevin B Hallberg; Cai-Yun Wan; Jie Li; Wen-Sheng Shu
Journal:  Appl Environ Microbiol       Date:  2011-06-24       Impact factor: 4.792

8.  Global biogeography and quantitative seasonal dynamics of Gemmatimonadetes in soil.

Authors:  Jennifer M DeBruyn; Lauren T Nixon; Mariam N Fawaz; Amy M Johnson; Mark Radosevich
Journal:  Appl Environ Microbiol       Date:  2011-07-15       Impact factor: 4.792

9.  Effect of genetically modified poplars on soil microbial communities during the phytoremediation of waste mine tailings.

Authors:  Moonsuk Hur; Yongho Kim; Hae-Ryong Song; Jong Min Kim; Young Im Choi; Hana Yi
Journal:  Appl Environ Microbiol       Date:  2011-09-02       Impact factor: 4.792

10.  Abundance and Activity of 16S rRNA, AmoA and NifH Bacterial Genes During Assisted Phytostabilization of Mine Tailings.

Authors:  Karis N Nelson; Julia W Neilson; Robert A Root; Jon Chorover; Raina M Maier
Journal:  Int J Phytoremediation       Date:  2015       Impact factor: 3.212

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