Literature DB >> 1841708

Determination of heteronuclear long-range couplings to heteronuclei in natural abundance by two- and three-dimensional NMR spectroscopy.

P Schmieder1, M Kurz, H Kessler.   

Abstract

A method to determine heteronuclear long-range couplings to carbon and nitrogen at natural abundance is presented and applied to two cyclic hexapeptides and the peptidomacrolide FK506. The method is applicable for proton-bearing heteronuclei. By introduction of heteronuclear half-filters in two- or three-dimensional experiments the spectra exhibit an E.COSY pattern when executed without heteronuclear decoupling. The extraction of the heteronuclear coupling constants is therefore independent of linewidth. In cyclo(-Ala-Ala-Ala-Pro-Ala-Pro-) a 13C-omega 1-half-filtered TOCSY spectrum yields the 3J(HN-C beta) coupling constant, which can be used to remove ambiguity in the phi angle determination from 3J(HN-H alpha). In cyclo(-D-Pro-Phe-Phe-Lys(Z)-Trp-Phe-) a 15N-omega 1-half-filtered TOCSY was applied to individually assign the diastereotopic beta-methylene protons via the 3J(H beta-N). In FK506 a 3D-HMQC-TOCSY without heteronuclear decoupling is used to obtain a number of heteronuclear coupling constants to carbons. These values have been applied for the assignment of diastereotopic methylene protons and determination of dihedral angles in the cyclic portion of the molecule.

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Year:  1991        PMID: 1841708     DOI: 10.1007/bf02192863

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  16 in total

1.  Refinement of the NMR structures for acyl carrier protein with scalar coupling data.

Authors:  Y Kim; J H Prestegard
Journal:  Proteins       Date:  1990

Review 2.  Chemistry and biology of the immunophilins and their immunosuppressive ligands.

Authors:  S L Schreiber
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Review 3.  Heteronuclear three-dimensional NMR spectroscopy of isotopically labelled biological macromolecules.

Authors:  S W Fesik; E R Zuiderweg
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Review 4.  Protein structures from NMR.

Authors:  R Kaptein; R Boelens; R M Scheek; W F van Gunsteren
Journal:  Biochemistry       Date:  1988-07-26       Impact factor: 3.162

5.  FK-506, a novel immunosuppressant isolated from a Streptomyces. II. Immunosuppressive effect of FK-506 in vitro.

Authors:  T Kino; H Hatanaka; S Miyata; N Inamura; M Nishiyama; T Yajima; T Goto; M Okuhara; M Kohsaka; H Aoki
Journal:  J Antibiot (Tokyo)       Date:  1987-09       Impact factor: 2.649

6.  FK-506, a novel immunosuppressant isolated from a Streptomyces. I. Fermentation, isolation, and physico-chemical and biological characteristics.

Authors:  T Kino; H Hatanaka; M Hashimoto; M Nishiyama; T Goto; M Okuhara; M Kohsaka; H Aoki; H Imanaka
Journal:  J Antibiot (Tokyo)       Date:  1987-09       Impact factor: 2.649

7.  Protein structures in solution by nuclear magnetic resonance and distance geometry. The polypeptide fold of the basic pancreatic trypsin inhibitor determined using two different algorithms, DISGEO and DISMAN.

Authors:  G Wagner; W Braun; T F Havel; T Schaumann; N Go; K Wüthrich
Journal:  J Mol Biol       Date:  1987-08-05       Impact factor: 5.469

8.  Pseudo-structures for the 20 common amino acids for use in studies of protein conformations by measurements of intramolecular proton-proton distance constraints with nuclear magnetic resonance.

Authors:  K Wüthrich; M Billeter; W Braun
Journal:  J Mol Biol       Date:  1983-10-05       Impact factor: 5.469

9.  113CD-1H spin-spin couplings in homonuclear 1H correlated spectroscopy of metallothionein. Identification of the cysteine 1H spin systems.

Authors:  D Neuhaus; G Wagner; M Vasák; J H Kägi; K Wüthrich
Journal:  Eur J Biochem       Date:  1984-09-17

10.  Determining stereo-specific 1H nuclear magnetic resonance assignments from distance geometry calculations.

Authors:  P L Weber; R Morrison; D Hare
Journal:  J Mol Biol       Date:  1988-11-20       Impact factor: 5.469

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  8 in total

1.  Heteronuclear NMR of DNA with the heteronucleus in natural abundance: facilitated assignment and extraction of coupling constants.

Authors:  P Schmieder; J H Ippel; H van den Elst; G A van der Marel; J H van Boom; C Altona; H Kessler
Journal:  Nucleic Acids Res       Date:  1992-09-25       Impact factor: 16.971

2.  A J-modulated protonless NMR experiment characterizes the conformational ensemble of the intrinsically disordered protein WIP.

Authors:  Eva Rozentur-Shkop; Gil Goobes; Jordan H Chill
Journal:  J Biomol NMR       Date:  2016-11-14       Impact factor: 2.835

3.  Determination of the backbone torsion angle epsilon in nucleic acids.

Authors:  M J Blommers; D Nanz; O Zerbe
Journal:  J Biomol NMR       Date:  1994-09       Impact factor: 2.835

4.  Measurement of four-bond HN-H alpha J-couplings in staphylococcal nuclease.

Authors:  G W Vuister; A Bax
Journal:  J Biomol NMR       Date:  1994-03       Impact factor: 2.835

5.  Coupling constants again: experimental restraints in structure refinement.

Authors:  D F Mierke; T Huber; H Kessler
Journal:  J Comput Aided Mol Des       Date:  1994-02       Impact factor: 3.686

6.  Measurement of inter-glycosidic 13C-1H coupling constants in a cyclic beta(1-->2)-glucan by 13C-filtered 2D (1H,1H)ROESY.

Authors:  L Poppe; W S York; H van Halbeek
Journal:  J Biomol NMR       Date:  1993-01       Impact factor: 2.835

7.  Determination of heteronuclear three-bond J-coupling constants in peptides by a simple heteronuclear relayed E.COSY experiment.

Authors:  J M Schmidt; R R Ernst; S Aimoto; M Kainosho
Journal:  J Biomol NMR       Date:  1995-07       Impact factor: 2.835

8.  Comparative genome analysis of Lactobacillus reuteri and Lactobacillus fermentum reveal a genomic island for reuterin and cobalamin production.

Authors:  Hidetoshi Morita; Hidehiro Toh; Shinji Fukuda; Hiroshi Horikawa; Kenshiro Oshima; Takehito Suzuki; Masaru Murakami; Shin Hisamatsu; Yukio Kato; Tatsuya Takizawa; Hideo Fukuoka; Tetsuhiko Yoshimura; Kikuji Itoh; Daniel J O'Sullivan; Larry L McKay; Hiroshi Ohno; Jun Kikuchi; Toshio Masaoka; Masahira Hattori
Journal:  DNA Res       Date:  2008-05-16       Impact factor: 4.458

  8 in total

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