Literature DB >> 16844760

Heteropolymer collapse theory for protein folding in the pressure-temperature plane.

Jason K Cheung1, Pooja Shah, Thomas M Truskett.   

Abstract

We revisit a heteropolymer collapse theory originally introduced to explore how the balance between hydrophobic interactions and configurational entropy determines the thermal stability of globular proteins at ambient pressure. We generalize the theory by introducing a basic statistical mechanical treatment for how pressure impacts the solvent-mediated interactions between hydrophobic amino-acid residues. In particular, we estimate the strength of the hydrophobic interactions using a molecular thermodynamic model for the interfacial free energy between liquid water and a curved hydrophobic solute. The model, which also reproduces many of the distinctive thermodynamic properties of aqueous solutions in bulk and interfacial environments, predicts that the water-solute interfacial free energy is significantly reduced by the application of high hydrostatic pressures. This allows water to penetrate into folded heteropolymers at high pressure and break apart their hydrophobic cores, a scenario suggested earlier by information theory calculations. As a result, folded heteropolymers are predicted to display the kind of closed region of stability in the pressure-temperature plane exhibited by native proteins. We compare predictions of the collapse theory with experimental data for several proteins.

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Year:  2006        PMID: 16844760      PMCID: PMC1562399          DOI: 10.1529/biophysj.106.081802

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  47 in total

1.  Molecular dynamics simulations of pressure effects on hydrophobic interactions.

Authors:  T Ghosh; A E García; S Garde
Journal:  J Am Chem Soc       Date:  2001-11-07       Impact factor: 15.419

Review 2.  Cold denaturation of proteins under high pressure.

Authors:  Shigeru Kunugi; Naoki Tanaka
Journal:  Biochim Biophys Acta       Date:  2002-03-25

3.  Determination of the volumetric properties of proteins and other solutes using pressure perturbation calorimetry.

Authors:  Lung-Nan Lin; John F Brandts; J Michael Brandts; Valerian Plotnikov
Journal:  Anal Biochem       Date:  2002-03-01       Impact factor: 3.365

Review 4.  Temperature-pressure configurational landscape of lipid bilayers and proteins.

Authors:  R Winter; W Dzwolak
Journal:  Cell Mol Biol (Noisy-le-grand)       Date:  2004-06       Impact factor: 1.770

5.  Coarse-grained strategy for modeling protein stability in concentrated solutions. II: phase behavior.

Authors:  Vincent K Shen; Jason K Cheung; Jeffrey R Errington; Thomas M Truskett
Journal:  Biophys J       Date:  2005-12-30       Impact factor: 4.033

6.  Insights into the role of hydration in protein structure and stability obtained through hydrostatic pressure studies.

Authors:  C A Royer
Journal:  Braz J Med Biol Res       Date:  2005-07-30       Impact factor: 2.590

7.  How the liquid-liquid transition affects hydrophobic hydration in deeply supercooled water.

Authors:  Dietmar Paschek
Journal:  Phys Rev Lett       Date:  2005-06-02       Impact factor: 9.161

8.  Pressure versus heat-induced unfolding of ribonuclease A: the case of hydrophobic interactions within a chain-folding initiation site.

Authors:  J Torrent; J P Connelly; M G Coll; M Ribó; R Lange; M Vilanova
Journal:  Biochemistry       Date:  1999-11-30       Impact factor: 3.162

Review 9.  Proteins under pressure. The influence of high hydrostatic pressure on structure, function and assembly of proteins and protein complexes.

Authors:  M Gross; R Jaenicke
Journal:  Eur J Biochem       Date:  1994-04-15

10.  An equation of state describing hydrophobic interactions.

Authors:  S J Gill; I Wadsö
Journal:  Proc Natl Acad Sci U S A       Date:  1976-09       Impact factor: 11.205

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  6 in total

1.  Coarse-grained strategy for modeling protein stability in concentrated solutions. III: directional protein interactions.

Authors:  Jason K Cheung; Vincent K Shen; Jeffrey R Errington; Thomas M Truskett
Journal:  Biophys J       Date:  2007-03-30       Impact factor: 4.033

2.  A water-explicit lattice model of heat-, cold-, and pressure-induced protein unfolding.

Authors:  Bryan A Patel; Pablo G Debenedetti; Frank H Stillinger; Peter J Rossky
Journal:  Biophys J       Date:  2007-08-31       Impact factor: 4.033

3.  Temperature and pressure dependence of protein stability: the engineered fluorescein-binding lipocalin FluA shows an elliptic phase diagram.

Authors:  Johannes Wiedersich; Simone Köhler; Arne Skerra; Josef Friedrich
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-07       Impact factor: 11.205

4.  Role of solvation in pressure-induced helix stabilization.

Authors:  Robert B Best; Cayla Miller; Jeetain Mittal
Journal:  J Chem Phys       Date:  2014-12-14       Impact factor: 3.488

5.  A Tale of Two Desolvation Potentials: An Investigation of Protein Behavior under High Hydrostatic Pressure.

Authors:  Andrei G Gasic; Margaret S Cheung
Journal:  J Phys Chem B       Date:  2020-02-24       Impact factor: 2.991

6.  High pressure inhibits signaling protein binding to the flagellar motor and bacterial chemotaxis through enhanced hydration.

Authors:  Hiroaki Hata; Yasutaka Nishihara; Masayoshi Nishiyama; Yoshiyuki Sowa; Ikuro Kawagishi; Akio Kitao
Journal:  Sci Rep       Date:  2020-02-11       Impact factor: 4.379

  6 in total

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