Literature DB >> 16851860

Mosaic energy landscapes of liquids and the control of protein conformational dynamics by glass-forming solvents.

Vassiliy Lubchenko1, Peter G Wolynes, Hans Frauenfelder.   

Abstract

Using recent advances in the Random First-Order Transition (RFOT) Theory of glass-forming liquids, we explain how the molecular motions of a glass-forming solvent distort the protein's boundary and slave some of the protein's conformational motions. Both the length and time scales of the solvent imposed constraints are provided by the RFOT theory. Comparison of the protein relaxation rate to that of the solvent provides an explicit lower bound on the size of the conformational space explored by the protein relaxation. Experimental measurements of slaving of myoglobin motions indicate that a major fraction of functionally important motions have significant entropic barriers.

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Year:  2005        PMID: 16851860     DOI: 10.1021/jp045205z

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  20 in total

1.  Protein folding is slaved to solvent motions.

Authors:  H Frauenfelder; P W Fenimore; G Chen; B H McMahon
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-09       Impact factor: 11.205

Review 2.  Ligand recombination and a hierarchy of solvent slaved dynamics: the origin of kinetic phases in hemeproteins.

Authors:  Uri Samuni; David Dantsker; Camille J Roche; Joel M Friedman
Journal:  Gene       Date:  2007-05-10       Impact factor: 3.688

3.  Minimizing frustration by folding in an aqueous environment.

Authors:  Carla Mattos; A Clay Clark
Journal:  Arch Biochem Biophys       Date:  2007-07-14       Impact factor: 4.013

4.  On the surface of glasses.

Authors:  Jacob D Stevenson; Peter G Wolynes
Journal:  J Chem Phys       Date:  2008-12-21       Impact factor: 3.488

5.  A unified model of protein dynamics.

Authors:  Hans Frauenfelder; Guo Chen; Joel Berendzen; Paul W Fenimore; Helén Jansson; Benjamin H McMahon; Izabela R Stroe; Jan Swenson; Robert D Young
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-27       Impact factor: 11.205

6.  Simultaneous measurements of solvent dynamics and functional kinetics in a light-activated enzyme.

Authors:  Guillaume Durin; Aude Delaunay; Claudine Darnault; Derren J Heyes; Antoine Royant; Xavier Vernede; C Neil Hunter; Martin Weik; Dominique Bourgeois
Journal:  Biophys J       Date:  2009-03-04       Impact factor: 4.033

7.  Competing interactions create functionality through frustration.

Authors:  Vassiliy Lubchenko
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-31       Impact factor: 11.205

8.  Quantum efficiency distributions of photo-induced side-pathway donor oxidation at cryogenic temperature in photosystem II.

Authors:  Joseph L Hughes; A William Rutherford; Miwa Sugiura; Elmars Krausz
Journal:  Photosynth Res       Date:  2008-09-03       Impact factor: 3.573

9.  Temperature and pressure dependence of protein stability: the engineered fluorescein-binding lipocalin FluA shows an elliptic phase diagram.

Authors:  Johannes Wiedersich; Simone Köhler; Arne Skerra; Josef Friedrich
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-07       Impact factor: 11.205

10.  The role of momentum transfer during incoherent neutron scattering is explained by the energy landscape model.

Authors:  Hans Frauenfelder; Robert D Young; Paul W Fenimore
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-01       Impact factor: 11.205

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