Literature DB >> 18295767

Structure and function of the native and recombinant mitochondrial MRP1/MRP2 complex from Trypanosoma brucei.

Alena Zíková1, Jana Kopecná, Maria A Schumacher, Kenneth Stuart, Lukás Trantírek, Julius Lukes.   

Abstract

The mitochondrial RNA-binding proteins (MRP) 1 and 2 play a regulatory role in RNA editing and putative role(s) in RNA processing in Trypanosoma brucei. Here, we report the purification of a high molecular weight protein complex consisting solely of the MRP1 and MRP2 proteins from the mitochondrion of T. brucei. The MRP1/MRP2 complex natively purified from T. brucei and the one reconstituted in Escherichia coli in vivo bind guide (g) RNAs and pre-mRNAs with dissociation constants in the nanomolar range, and efficiently promote annealing of pre-mRNAs with their cognate gRNAs. In addition, the MRP1/MRP2 complex stimulates annealing between two non-cognate RNA molecules suggesting that along with the cognate duplexes, spuriously mismatched RNA hybrids may be formed at some rate in vivo. A mechanism of catalysed annealing of gRNA/pre-mRNA by the MRP1/MRP2 complex is proposed.

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Year:  2008        PMID: 18295767      PMCID: PMC2492832          DOI: 10.1016/j.ijpara.2007.12.009

Source DB:  PubMed          Journal:  Int J Parasitol        ISSN: 0020-7519            Impact factor:   3.981


  40 in total

1.  Angular reconstitution: a posteriori assignment of projection directions for 3D reconstruction.

Authors:  M Van Heel
Journal:  Ultramicroscopy       Date:  1987       Impact factor: 2.689

2.  A statistical model for identifying proteins by tandem mass spectrometry.

Authors:  Alexey I Nesvizhskii; Andrew Keller; Eugene Kolker; Ruedi Aebersold
Journal:  Anal Chem       Date:  2003-09-01       Impact factor: 6.986

Review 3.  Mitochondrial proteins and complexes in Leishmania and Trypanosoma involved in U-insertion/deletion RNA editing.

Authors:  Larry Simpson; Ruslan Aphasizhev; Guanghan Gao; Xuedong Kang
Journal:  RNA       Date:  2004-02       Impact factor: 4.942

4.  Isolation of a U-insertion/deletion editing complex from Leishmania tarentolae mitochondria.

Authors:  Ruslan Aphasizhev; Inna Aphasizheva; Robert E Nelson; Guanghan Gao; Agda M Simpson; Xuedong Kang; Arnold M Falick; Sandro Sbicego; Larry Simpson
Journal:  EMBO J       Date:  2003-02-17       Impact factor: 11.598

5.  Mfold web server for nucleic acid folding and hybridization prediction.

Authors:  Michael Zuker
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

6.  Identification of novel components of Trypanosoma brucei editosomes.

Authors:  Aswini K Panigrahi; Achim Schnaufer; Nancy L Ernst; Bingbing Wang; Nicole Carmean; Reza Salavati; Kenneth Stuart
Journal:  RNA       Date:  2003-04       Impact factor: 4.942

7.  Experimental protein mixture for validating tandem mass spectral analysis.

Authors:  Andrew Keller; Samuel Purvine; Alexey I Nesvizhskii; Sergey Stolyar; David R Goodlett; Eugene Kolker
Journal:  OMICS       Date:  2002

8.  A model for RNA editing in kinetoplastid mitochondria: "guide" RNA molecules transcribed from maxicircle DNA provide the edited information.

Authors:  B Blum; N Bakalara; L Simpson
Journal:  Cell       Date:  1990-01-26       Impact factor: 41.582

9.  Statistical image analysis of electron micrographs of ribosomal subunits.

Authors:  G Harauz; E Boekema; M van Heel
Journal:  Methods Enzymol       Date:  1988       Impact factor: 1.600

10.  Mass spectrometric analysis of the editosome and other multiprotein complexes in Trypanosoma brucei.

Authors:  Aswini K Panigrahi; Thomas E Allen; Kenneth Stuart; Paul A Haynes; Steven P Gygi
Journal:  J Am Soc Mass Spectrom       Date:  2003-07       Impact factor: 3.109

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  25 in total

1.  TbRGG2 facilitates kinetoplastid RNA editing initiation and progression past intrinsic pause sites.

Authors:  Michelle L Ammerman; Vladimir Presnyak; John C Fisk; Bardees M Foda; Laurie K Read
Journal:  RNA       Date:  2010-09-20       Impact factor: 4.942

2.  OB-fold domain of KREPA4 mediates high-affinity interaction with guide RNA and possesses annealing activity.

Authors:  Smriti Kala; Reza Salavati
Journal:  RNA       Date:  2010-08-16       Impact factor: 4.942

3.  The MRB1 complex functions in kinetoplastid RNA processing.

Authors:  Nathalie Acestor; Aswini K Panigrahi; Jason Carnes; Alena Zíková; Kenneth D Stuart
Journal:  RNA       Date:  2008-12-18       Impact factor: 4.942

4.  Kinetoplastid guide RNA biogenesis is dependent on subunits of the mitochondrial RNA binding complex 1 and mitochondrial RNA polymerase.

Authors:  Hassan Hashimi; Zdenka Cicová; Lucie Novotná; Yan-Zi Wen; Julius Lukes
Journal:  RNA       Date:  2009-02-18       Impact factor: 4.942

5.  A protein-protein interaction map of trypanosome ~20S editosomes.

Authors:  Achim Schnaufer; Meiting Wu; Young-jun Park; Tadashi Nakai; Junpeng Deng; Rose Proff; Wim G J Hol; Kenneth D Stuart
Journal:  J Biol Chem       Date:  2009-12-14       Impact factor: 5.157

6.  Distinct and overlapping functions of MRP1/2 and RBP16 in mitochondrial RNA metabolism.

Authors:  John C Fisk; Vladimir Presnyak; Michelle L Ammerman; Laurie K Read
Journal:  Mol Cell Biol       Date:  2009-07-20       Impact factor: 4.272

7.  3' adenylation determines mRNA abundance and monitors completion of RNA editing in T. brucei mitochondria.

Authors:  Ronald D Etheridge; Inna Aphasizheva; Paul D Gershon; Ruslan Aphasizhev
Journal:  EMBO J       Date:  2008-05-08       Impact factor: 11.598

8.  TbRGG1, an essential protein involved in kinetoplastid RNA metabolism that is associated with a novel multiprotein complex.

Authors:  Hassan Hashimi; Alena Zíková; Aswini K Panigrahi; Kenneth D Stuart; Julius Lukes
Journal:  RNA       Date:  2008-03-27       Impact factor: 4.942

9.  Functions and cellular localization of cysteine desulfurase and selenocysteine lyase in Trypanosoma brucei.

Authors:  Pavel Poliak; Douglas Van Hoewyk; Miroslav Oborník; Alena Zíková; Kenneth D Stuart; Jan Tachezy; Marinus Pilon; Julius Lukes
Journal:  FEBS J       Date:  2009-12-07       Impact factor: 5.542

10.  Uridine insertion/deletion RNA editing in trypanosomatid mitochondria: In search of the editosome.

Authors:  Daren Osato; Kestrel Rogers; Qiang Guo; Feng Li; Greg Richmond; Felix Klug; Larry Simpson
Journal:  RNA       Date:  2009-05-15       Impact factor: 4.942

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