Literature DB >> 18369185

TbRGG1, an essential protein involved in kinetoplastid RNA metabolism that is associated with a novel multiprotein complex.

Hassan Hashimi1, Alena Zíková, Aswini K Panigrahi, Kenneth D Stuart, Julius Lukes.   

Abstract

The uridine insertion/deletion RNA editing of kinetoplastid mitochondrial transcripts is performed by complex machinery involving a number of proteins and multiple protein complexes. Here we describe the effect of silencing of TbRGG1 gene by RNA interference on RNA editing in procyclic stage of Trypanosoma brucei. TbRGG1 is an essential protein for cell growth, the absence of which results in an overall decline of edited mRNAs, while the levels of never-edited RNAs remain unaltered. Repression of TbRGG1 expression has no effect on the 20S editosome and MRP1/2 complex. TAP-tag purification of TbRGG1 coisolated a novel multiprotein complex, and its association was further verified by TAP-tag analyses of two other components of the complex. TbRGG1 interaction with this complex appears to be mediated by RNA. Our results suggest that the TbRGG1 protein functions in stabilizing edited RNAs or editing efficiency and that the associated novel complex may have a role in mitochondrial RNA metabolism. We provisionally name it putative mitochondrial RNA-binding complex 1 (put-MRB complex 1).

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Year:  2008        PMID: 18369185      PMCID: PMC2327366          DOI: 10.1261/rna.888808

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  36 in total

Review 1.  Mitochondrial proteins and complexes in Leishmania and Trypanosoma involved in U-insertion/deletion RNA editing.

Authors:  Larry Simpson; Ruslan Aphasizhev; Guanghan Gao; Xuedong Kang
Journal:  RNA       Date:  2004-02       Impact factor: 4.942

2.  The involvement of gRNA-binding protein gBP21 in RNA editing-an in vitro and in vivo analysis.

Authors:  L Lambert; U F Müller; A E Souza; H U Göringer
Journal:  Nucleic Acids Res       Date:  1999-03-15       Impact factor: 16.971

Review 3.  Complex management: RNA editing in trypanosomes.

Authors:  Kenneth D Stuart; Achim Schnaufer; Nancy Lewis Ernst; Aswini K Panigrahi
Journal:  Trends Biochem Sci       Date:  2005-02       Impact factor: 13.807

4.  TbMP44 is essential for RNA editing and structural integrity of the editosome in Trypanosoma brucei.

Authors:  Bingbing Wang; Nancy Lewis Ernst; Setareh S Palazzo; Aswini K Panigrahi; Reza Salavati; Kenneth Stuart
Journal:  Eukaryot Cell       Date:  2003-06

5.  Trypanosoma brucei TBRGG1, a mitochondrial oligo(U)-binding protein that co-localizes with an in vitro RNA editing activity.

Authors:  L Vanhamme; D Perez-Morga; C Marchal; D Speijer; L Lambert; M Geuskens; S Alexandre; N Ismaïli; U Göringer; R Benne; E Pays
Journal:  J Biol Chem       Date:  1998-08-21       Impact factor: 5.157

Review 6.  Conserved structures and diversity of functions of RNA-binding proteins.

Authors:  C G Burd; G Dreyfuss
Journal:  Science       Date:  1994-07-29       Impact factor: 47.728

7.  The 3'-untranslated region of cytochrome oxidase II mRNA functions in RNA editing of African trypanosomes exclusively as a cis guide RNA.

Authors:  Daniel E Golden; Stephen L Hajduk
Journal:  RNA       Date:  2004-12-01       Impact factor: 4.942

8.  Kinetoplastid RNA-editing-associated protein 1 (REAP-1): a novel editing complex protein with repetitive domains.

Authors:  S Madison-Antenucci; R S Sabatini; V W Pollard; S L Hajduk
Journal:  EMBO J       Date:  1998-11-02       Impact factor: 11.598

9.  Transcription and editing of cytochrome oxidase II RNAs in Trypanosoma cruzi.

Authors:  K S Kim; S M Teixeira; L V Kirchhoff; J E Donelson
Journal:  J Biol Chem       Date:  1994-01-14       Impact factor: 5.157

10.  Identification by UV cross-linking of oligo(U)-binding proteins in mitochondria of the insect trypanosomatid Crithidia fasciculata.

Authors:  P Leegwater; D Speijer; R Benne
Journal:  Eur J Biochem       Date:  1995-02-01
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  58 in total

1.  Protein translocase of mitochondrial inner membrane in Trypanosoma brucei.

Authors:  Ujjal K Singha; Vanae Hamilton; Melanie R Duncan; Ebony Weems; Manish K Tripathi; Minu Chaudhuri
Journal:  J Biol Chem       Date:  2012-03-09       Impact factor: 5.157

2.  TbRGG2 facilitates kinetoplastid RNA editing initiation and progression past intrinsic pause sites.

Authors:  Michelle L Ammerman; Vladimir Presnyak; John C Fisk; Bardees M Foda; Laurie K Read
Journal:  RNA       Date:  2010-09-20       Impact factor: 4.942

3.  OB-fold domain of KREPA4 mediates high-affinity interaction with guide RNA and possesses annealing activity.

Authors:  Smriti Kala; Reza Salavati
Journal:  RNA       Date:  2010-08-16       Impact factor: 4.942

4.  REH2C Helicase and GRBC Subcomplexes May Base Pair through mRNA and Small Guide RNA in Kinetoplastid Editosomes.

Authors:  Vikas Kumar; Bhaskara R Madina; Shelly Gulati; Ajay A Vashisht; Chiedza Kanyumbu; Brittany Pieters; Afzal Shakir; James A Wohlschlegel; Laurie K Read; Blaine H M Mooers; Jorge Cruz-Reyes
Journal:  J Biol Chem       Date:  2016-01-14       Impact factor: 5.157

5.  Novel TUTase associates with an editosome-like complex in mitochondria of Trypanosoma brucei.

Authors:  Inna Aphasizheva; Gene-Errol Ringpis; James Weng; Paul D Gershon; Richard H Lathrop; Ruslan Aphasizhev
Journal:  RNA       Date:  2009-05-22       Impact factor: 4.942

6.  The MRB1 complex functions in kinetoplastid RNA processing.

Authors:  Nathalie Acestor; Aswini K Panigrahi; Jason Carnes; Alena Zíková; Kenneth D Stuart
Journal:  RNA       Date:  2008-12-18       Impact factor: 4.942

7.  Kinetoplastid guide RNA biogenesis is dependent on subunits of the mitochondrial RNA binding complex 1 and mitochondrial RNA polymerase.

Authors:  Hassan Hashimi; Zdenka Cicová; Lucie Novotná; Yan-Zi Wen; Julius Lukes
Journal:  RNA       Date:  2009-02-18       Impact factor: 4.942

8.  Guide RNA biogenesis involves a novel RNase III family endoribonuclease in Trypanosoma brucei.

Authors:  Bhaskara Reddy Madina; Gokulan Kuppan; Ajay A Vashisht; Yu-He Liang; Kurtis M Downey; James A Wohlschlegel; Xinhua Ji; Sing-Hoi Sze; James C Sacchettini; Laurie K Read; Jorge Cruz-Reyes
Journal:  RNA       Date:  2011-08-02       Impact factor: 4.942

9.  An arginine-glycine-rich RNA binding protein impacts the abundance of specific mRNAs in the mitochondria of Trypanosoma brucei.

Authors:  Natalie M McAdams; Michelle L Ammerman; Julee Nanduri; Kaylen Lott; John C Fisk; Laurie K Read
Journal:  Eukaryot Cell       Date:  2014-12-05

10.  Guide RNA-binding complex from mitochondria of trypanosomatids.

Authors:  James Weng; Inna Aphasizheva; Ronald D Etheridge; Lan Huang; Xiaorong Wang; Arnold M Falick; Ruslan Aphasizhev
Journal:  Mol Cell       Date:  2008-10-24       Impact factor: 17.970

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