Literature DB >> 14730014

Mitochondrial proteins and complexes in Leishmania and Trypanosoma involved in U-insertion/deletion RNA editing.

Larry Simpson1, Ruslan Aphasizhev, Guanghan Gao, Xuedong Kang.   

Abstract

A number of mitochondrial proteins have been identified in Leishmania sp. and Trypanosoma brucei that may be involved in U-insertion/deletion RNA editing. Only a few of these have yet been characterized sufficiently to be able to assign functional names for the proteins in both species, and most have been denoted by a variety of species-specific and laboratory-specific operational names, leading to a terminology confusion both within and outside of this field. In this review, we summarize the present status of our knowledge of the orthologous and unique putative editing proteins in both species and the functional motifs identified by sequence analysis and by experimentation. An online Supplemental sequence database (http://164.67.60.200/proteins/protsmini1.asp) is also provided as a research resource.

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Year:  2004        PMID: 14730014      PMCID: PMC1370527          DOI: 10.1261/rna.5170704

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  49 in total

1.  Trypanosoma brucei U insertion and U deletion activities co-purify with an enzymatic editing complex but are differentially optimized.

Authors:  J Cruz-Reyes; L N Rusché; B Sollner-Webb
Journal:  Nucleic Acids Res       Date:  1998-08-15       Impact factor: 16.971

2.  Association of guide RNA binding protein gBP21 with active RNA editing complexes in Trypanosoma brucei.

Authors:  T E Allen; S Heidmann; R Reed; P J Myler; H U Göringer; K D Stuart
Journal:  Mol Cell Biol       Date:  1998-10       Impact factor: 4.272

3.  Trypanosoma brucei TBRGG1, a mitochondrial oligo(U)-binding protein that co-localizes with an in vitro RNA editing activity.

Authors:  L Vanhamme; D Perez-Morga; C Marchal; D Speijer; L Lambert; M Geuskens; S Alexandre; N Ismaïli; U Göringer; R Benne; E Pays
Journal:  J Biol Chem       Date:  1998-08-21       Impact factor: 5.157

4.  A putative RNA helicase of the DEAD box family from Trypanosoma brucei.

Authors:  A Missel; G Nörskau; H H Shu; H U Göringer
Journal:  Mol Biochem Parasitol       Date:  1995-12       Impact factor: 1.759

5.  A three-dimensional working model for a guide RNA from Trypanosoma brucei.

Authors:  T Hermann; B Schmid; H Heumann; H U Göringer
Journal:  Nucleic Acids Res       Date:  1997-06-15       Impact factor: 16.971

6.  Purification of a functional enzymatic editing complex from Trypanosoma brucei mitochondria.

Authors:  L N Rusché; J Cruz-Reyes; K J Piller; B Sollner-Webb
Journal:  EMBO J       Date:  1997-07-01       Impact factor: 11.598

7.  Trypanosoma brucei gBP21. An arginine-rich mitochondrial protein that binds to guide RNA with high affinity.

Authors:  J Köller; U F Müller; B Schmid; A Missel; V Kruft; K Stuart; H U Göringer
Journal:  J Biol Chem       Date:  1997-02-07       Impact factor: 5.157

8.  Disruption of a gene encoding a novel mitochondrial DEAD-box protein in Trypanosoma brucei affects edited mRNAs.

Authors:  A Missel; A E Souza; G Nörskau; H U Göringer
Journal:  Mol Cell Biol       Date:  1997-09       Impact factor: 4.272

9.  Trypanosoma brucei RBP16 is a mitochondrial Y-box family protein with guide RNA binding activity.

Authors:  M L Hayman; L K Read
Journal:  J Biol Chem       Date:  1999-04-23       Impact factor: 5.157

10.  Kinetoplastid RNA-editing-associated protein 1 (REAP-1): a novel editing complex protein with repetitive domains.

Authors:  S Madison-Antenucci; R S Sabatini; V W Pollard; S L Hajduk
Journal:  EMBO J       Date:  1998-11-02       Impact factor: 11.598

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  79 in total

1.  TbRGG2 facilitates kinetoplastid RNA editing initiation and progression past intrinsic pause sites.

Authors:  Michelle L Ammerman; Vladimir Presnyak; John C Fisk; Bardees M Foda; Laurie K Read
Journal:  RNA       Date:  2010-09-20       Impact factor: 4.942

2.  OB-fold domain of KREPA4 mediates high-affinity interaction with guide RNA and possesses annealing activity.

Authors:  Smriti Kala; Reza Salavati
Journal:  RNA       Date:  2010-08-16       Impact factor: 4.942

Review 3.  Unexplained complexity of the mitochondrial genome and transcriptome in kinetoplastid flagellates.

Authors:  Julius Lukes; Hassan Hashimi; Alena Zíková
Journal:  Curr Genet       Date:  2005-11-04       Impact factor: 3.886

4.  Mitochondrial DNA ligases of Trypanosoma brucei.

Authors:  Nick Downey; Jane C Hines; Krishna M Sinha; Dan S Ray
Journal:  Eukaryot Cell       Date:  2005-04

5.  Compositionally and functionally distinct editosomes in Trypanosoma brucei.

Authors:  Aswini K Panigrahi; Nancy Lewis Ernst; Gonzalo J Domingo; Michele Fleck; Reza Salavati; Kenneth D Stuart
Journal:  RNA       Date:  2006-04-12       Impact factor: 4.942

6.  Interactions of mRNAs and gRNAs involved in trypanosome mitochondrial RNA editing: structure probing of a gRNA bound to its cognate mRNA.

Authors:  Laura E Yu; Donna J Koslowsky
Journal:  RNA       Date:  2006-04-17       Impact factor: 4.942

7.  KREPA4, an RNA binding protein essential for editosome integrity and survival of Trypanosoma brucei.

Authors:  Reza Salavati; Nancy Lewis Ernst; Jeff O'Rear; Troy Gilliam; Salvador Tarun; Kenneth Stuart
Journal:  RNA       Date:  2006-04-06       Impact factor: 4.942

8.  Evidence for U-tail stabilization of gRNA/mRNA interactions in kinetoplastid RNA editing.

Authors:  Donna J Koslowsky; Larissa Reifur; Laura E Yu; Weiqin Chen
Journal:  RNA Biol       Date:  2004-05-31       Impact factor: 4.652

9.  Impact of human pathogenic micro-insertions and micro-deletions on post-transcriptional regulation.

Authors:  Xinjun Zhang; Hai Lin; Huiying Zhao; Yangyang Hao; Matthew Mort; David N Cooper; Yaoqi Zhou; Yunlong Liu
Journal:  Hum Mol Genet       Date:  2014-01-16       Impact factor: 6.150

10.  Guide RNA-binding complex from mitochondria of trypanosomatids.

Authors:  James Weng; Inna Aphasizheva; Ronald D Etheridge; Lan Huang; Xiaorong Wang; Arnold M Falick; Ruslan Aphasizhev
Journal:  Mol Cell       Date:  2008-10-24       Impact factor: 17.970

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