Literature DB >> 14960472

The Jalview Java alignment editor.

Michele Clamp1, James Cuff, Stephen M Searle, Geoffrey J Barton.   

Abstract

Multiple sequence alignment remains a crucial method for understanding the function of groups of related nucleic acid and protein sequences. However, it is known that automatic multiple sequence alignments can often be improved by manual editing. Therefore, tools are needed to view and edit multiple sequence alignments. Due to growth in the sequence databases, multiple sequence alignments can often be large and difficult to view efficiently. The Jalview Java alignment editor is presented here, which enables fast viewing and editing of large multiple sequence alignments.

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Year:  2004        PMID： 14960472     DOI： 10.1093/bioinformatics/btg430

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  699 in total

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Authors:  Radhika Borra; Dezheng Dong; Ahmed Y Elnagar; Getachew A Woldemariam; Julio A Camarero
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3.  Ensembl 2004.

Authors:  E Birney; D Andrews; P Bevan; M Caccamo; G Cameron; Y Chen; L Clarke; G Coates; T Cox; J Cuff; V Curwen; T Cutts; T Down; R Durbin; E Eyras; X M Fernandez-Suarez; P Gane; B Gibbins; J Gilbert; M Hammond; H Hotz; V Iyer; A Kahari; K Jekosch; A Kasprzyk; D Keefe; S Keenan; H Lehvaslaiho; G McVicker; C Melsopp; P Meidl; E Mongin; R Pettett; S Potter; G Proctor; M Rae; S Searle; G Slater; D Smedley; J Smith; W Spooner; A Stabenau; J Stalker; R Storey; A Ureta-Vidal; C Woodwark; M Clamp; T Hubbard
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

4.  PDA: a pipeline to explore and estimate polymorphism in large DNA databases.

Authors:  Sònia Casillas; Antonio Barbadilla
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

5.  MyHits: a new interactive resource for protein annotation and domain identification.

Authors:  Marco Pagni; Vassilios Ioannidis; Lorenzo Cerutti; Monique Zahn-Zabal; C Victor Jongeneel; Laurent Falquet
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

6.  High-resolution cardiovascular function confirms functional orthology of myocardial contractility pathways in zebrafish.

Authors:  Jordan T Shin; Eugene V Pomerantsev; John D Mably; Calum A MacRae
Journal:  Physiol Genomics       Date:  2010-04-13       Impact factor: 3.107

7.  Isoform-specific targeting and interaction domains in human nicotinamide mononucleotide adenylyltransferases.

Authors:  Corinna Lau; Christian Dölle; Toni I Gossmann; Line Agledal; Marc Niere; Mathias Ziegler
Journal:  J Biol Chem       Date:  2010-04-13       Impact factor: 5.157

8.  Structure and activity of human mitochondrial peptide deformylase, a novel cancer target.

Authors:  Sindy Escobar-Alvarez; Yehuda Goldgur; Guangli Yang; Ouathek Ouerfelli; Yueming Li; David A Scheinberg
Journal:  J Mol Biol       Date:  2009-02-21       Impact factor: 5.469

9.  Structural insights into the extracytoplasmic thiamine-binding lipoprotein p37 of Mycoplasma hyorhinis.

Authors:  Katherine H Sippel; Arthur H Robbins; Robbie Reutzel; Susan K Boehlein; Kazunori Namiki; Steve Goodison; Mavis Agbandje-McKenna; Charles J Rosser; Robert McKenna
Journal:  J Bacteriol       Date:  2009-02-20       Impact factor: 3.490

10.  Zea mays annexins modulate cytosolic free Ca2+ and generate a Ca2+-permeable conductance.

Authors:  Anuphon Laohavisit; Jennifer C Mortimer; Vadim Demidchik; Katy M Coxon; Matthew A Stancombe; Neil Macpherson; Colin Brownlee; Andreas Hofmann; Alex A R Webb; Henk Miedema; Nicholas H Battey; Julia M Davies
Journal:  Plant Cell       Date:  2009-02-20       Impact factor: 11.277
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