Literature DB >> 9228947

Protein alchemy: changing beta-sheet into alpha-helix.

S Dalal1, S Balasubramanian, L Regan.   

Abstract

For most proteins the amino acid sequence determines the tertiary structure. The relative importance of the individual amino acids in specifying the fold, however, remains unclear. To highlight this, Creamer and Rose put forth the 'Paracelsus challenge': Design a protein with 50% sequence identity to a protein with a different fold. We have met this challenge by designing a sequence which retains 50% identity to a predominantly beta-sheet protein, but which now adopts a four helix bundle conformation and possesses the attributes of a native protein. Our results emphasize that a subset of the amino acid sequence is sufficient to specify a fold, and have implications both for structure prediction and design.

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Year:  1997        PMID: 9228947     DOI: 10.1038/nsb0797-548

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  32 in total

1.  Scoring functions in protein folding and design.

Authors:  R I Dima; J R Banavar; A Maritan
Journal:  Protein Sci       Date:  2000-04       Impact factor: 6.725

2.  Understanding the sequence determinants of conformational switching using protein design.

Authors:  S Dalal; L Regan
Journal:  Protein Sci       Date:  2000-09       Impact factor: 6.725

3.  The EF-hand domain: a globally cooperative structural unit.

Authors:  Melanie R Nelson; Eva Thulin; Patricia A Fagan; Sture Forsén; Walter J Chazin
Journal:  Protein Sci       Date:  2002-02       Impact factor: 6.725

4.  Sequence variations within protein families are linearly related to structural variations.

Authors:  Patrice Koehl; Michael Levitt
Journal:  J Mol Biol       Date:  2002-10-25       Impact factor: 5.469

5.  Protein grafting of an HIV-1-inhibiting epitope.

Authors:  Samuel K Sia; Peter S Kim
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-11       Impact factor: 11.205

6.  The denatured state dictates the topology of two proteins with almost identical sequence but different native structure and function.

Authors:  Angela Morrone; Michelle E McCully; Philip N Bryan; Maurizio Brunori; Valerie Daggett; Stefano Gianni; Carlo Travaglini-Allocatelli
Journal:  J Biol Chem       Date:  2010-11-29       Impact factor: 5.157

7.  Examination of the quality of various force fields and solvation models for the equilibrium simulations of GA88 and GB88.

Authors:  Juan Zeng; Yongxiu Li; John Z H Zhang; Ye Mei
Journal:  J Mol Model       Date:  2016-07-08       Impact factor: 1.810

8.  Synthesis, folding, and structure of the beta-turn mimic modified B1 domain of streptococcal protein G.

Authors:  B Odaert; F Jean; C Boutillon; E Buisine; O Melnyk; A Tartar; G Lippens
Journal:  Protein Sci       Date:  1999-12       Impact factor: 6.725

Review 9.  Protein reconstitution and three-dimensional domain swapping: benefits and constraints of covalency.

Authors:  Jannette Carey; Stina Lindman; Mikael Bauer; Sara Linse
Journal:  Protein Sci       Date:  2007-11       Impact factor: 6.725

10.  The design and characterization of two proteins with 88% sequence identity but different structure and function.

Authors:  Patrick A Alexander; Yanan He; Yihong Chen; John Orban; Philip N Bryan
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-03       Impact factor: 11.205

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