Literature DB >> 18270202

Solution NMR structures of productive and non-productive complexes between the A and B domains of the cytoplasmic subunit of the mannose transporter of the Escherichia coli phosphotransferase system.

Jun Hu1, Kaifeng Hu, David C Williams, Michal E Komlosh, Mengli Cai, G Marius Clore.   

Abstract

Solution structures of complexes between the isolated A (IIA(Man)) and B (IIB(Man)) domains of the cytoplasmic component of the mannose transporter of Escherichia coli have been solved by NMR. The complex of wild-type IIA(Man) and IIB(Man) is a mixture of two species comprising a productive, phosphoryl transfer competent complex and a non-productive complex with the two active site histidines, His-10 of IIA(Man) and His-175 of IIB(Man), separated by approximately 25A. Mutation of the active site histidine, His-10, of IIA(Man) to a glutamate, to mimic phosphorylation, results in the formation of a single productive complex. The apparent equilibrium dissociation constants for the binding of both wild-type and H10E IIA(Man) to IIB(Man) are approximately the same (K(D) approximately 0.5 mM). The productive complex can readily accommodate a transition state involving a pentacoordinate phosphoryl group with trigonal bipyramidal geometry bonded to the Nepsilon2 atom of His-10 of IIA(Man) and the Ndelta1 atom of His-175 of IIB(Man) with negligible (<0.2A) local backbone conformational changes in the immediate vicinity of the active site. The non-productive complex is related to the productive one by a approximately 90 degrees rotation and approximately 37A translation of IIB(Man) relative to IIA(Man), leaving the active site His-175 of IIB(Man) fully exposed to solvent in the non-productive complex. The interaction surface on IIA(Man) for the non-productive complex comprises a subset of residues used in the productive complex and in both cases involves both subunits of IIA(Man). The selection of the productive complex by IIA(Man)(H10E) can be attributed to neutralization of the positively charged Arg-172 of IIB(Man) at the center of the interface. The non-productive IIA(Man)-IIB(Man) complex may possibly be relevant to subsequent phosphoryl transfer from His-175 of IIB(Man) to the incoming sugar located on the transmembrane IIC(Man)-IID(Man) complex.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18270202      PMCID: PMC2447639          DOI: 10.1074/jbc.M800312200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  54 in total

1.  Accurate calculation of the density of proteins.

Authors:  M L Quillin; B W Matthews
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-07

Review 2.  NMR studies of protein structure and dynamics.

Authors:  Lewis E Kay
Journal:  J Magn Reson       Date:  2005-04       Impact factor: 2.229

3.  Solution structure of a post-transition state analog of the phosphotransfer reaction between the A and B cytoplasmic domains of the mannitol transporter IIMannitol of the Escherichia coli phosphotransferase system.

Authors:  Jeong-Yong Suh; Mengli Cai; David C Williams; G Marius Clore
Journal:  J Biol Chem       Date:  2006-01-28       Impact factor: 5.157

4.  A pseudopotential for improving the packing of ellipsoidal protein structures determined from NMR data.

Authors:  Charles D Schwieters; G Marius Clore
Journal:  J Phys Chem B       Date:  2007-12-19       Impact factor: 2.991

5.  Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.

Authors:  A Nicholls; K A Sharp; B Honig
Journal:  Proteins       Date:  1991

6.  The structure of an energy-coupling protein from bacteria, IIBcellobiose, reveals similarity to eukaryotic protein tyrosine phosphatases.

Authors:  R L van Montfort; T Pijning; K H Kalk; J Reizer; M H Saier; M M Thunnissen; G T Robillard; B W Dijkstra
Journal:  Structure       Date:  1997-02-15       Impact factor: 5.006

7.  Stereochemical course of the reactions catalyzed by the bacterial phosphoenolpyruvate:mannitol phosphotransferase system.

Authors:  E G Mueller; S S Khandekar; J R Knowles; G R Jacobson
Journal:  Biochemistry       Date:  1990-07-24       Impact factor: 3.162

8.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

9.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

Review 10.  Carbohydrate transporters of the bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS).

Authors:  C Siebold; K Flükiger; R Beutler; B Erni
Journal:  FEBS Lett       Date:  2001-08-31       Impact factor: 4.124

View more
  10 in total

1.  Solution structure of the IIAChitobiose-HPr complex of the N,N'-diacetylchitobiose branch of the Escherichia coli phosphotransferase system.

Authors:  Young-Sang Jung; Mengli Cai; G Marius Clore
Journal:  J Biol Chem       Date:  2012-05-16       Impact factor: 5.157

2.  Replica exchange simulations of transient encounter complexes in protein-protein association.

Authors:  Young C Kim; Chun Tang; G Marius Clore; Gerhard Hummer
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-26       Impact factor: 11.205

3.  Molecular simulations of a dynamic protein complex: role of salt-bridges and polar interactions in configurational transitions.

Authors:  Liqun Zhang; Matthias Buck
Journal:  Biophys J       Date:  2013-11-19       Impact factor: 4.033

4.  Solution structure of the IIAChitobiose-IIBChitobiose complex of the N,N'-diacetylchitobiose branch of the Escherichia coli phosphotransferase system.

Authors:  Young-Sang Jung; Mengli Cai; G Marius Clore
Journal:  J Biol Chem       Date:  2009-12-03       Impact factor: 5.157

5.  Biophysical characterization of the domain association between cytosolic A and B domains of the mannitol transporter enzymes II(Mtl) in the presence and absence of a connecting linker.

Authors:  Ko On Lee; Eun-Hee Kim; Gowoon Kim; Jea Yeon Jung; Shigeru Katayama; Soichiro Nakamura; Jeong-Yong Suh
Journal:  Protein Sci       Date:  2016-08-01       Impact factor: 6.725

Review 6.  Structure, dynamics and biophysics of the cytoplasmic protein-protein complexes of the bacterial phosphoenolpyruvate: sugar phosphotransferase system.

Authors:  G Marius Clore; Vincenzo Venditti
Journal:  Trends Biochem Sci       Date:  2013-09-19       Impact factor: 13.807

7.  Solution structure of a complex of the histidine autokinase CheA with its substrate CheY.

Authors:  Guoya Mo; Hongjun Zhou; Tetsuya Kawamura; Frederick W Dahlquist
Journal:  Biochemistry       Date:  2012-04-26       Impact factor: 3.162

Review 8.  Theory, practice, and applications of paramagnetic relaxation enhancement for the characterization of transient low-population states of biological macromolecules and their complexes.

Authors:  G Marius Clore; Junji Iwahara
Journal:  Chem Rev       Date:  2009-09       Impact factor: 60.622

9.  Streptococcal phosphotransferase system imports unsaturated hyaluronan disaccharide derived from host extracellular matrices.

Authors:  Sayoko Oiki; Yusuke Nakamichi; Yukie Maruyama; Bunzo Mikami; Kousaku Murata; Wataru Hashimoto
Journal:  PLoS One       Date:  2019-11-07       Impact factor: 3.240

10.  Crystal Structure of Mannose Specific IIA Subunit of Phosphotransferase System from Streptococcus pneumoniae.

Authors:  Malgorzata Magoch; Przemyslaw Nogly; Przemyslaw Grudnik; Pikyee Ma; Bozena Boczkus; Ana Rute Neves; Margarida Archer; Grzegorz Dubin
Journal:  Molecules       Date:  2020-10-12       Impact factor: 4.411

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.