Literature DB >> 24055245

Structure, dynamics and biophysics of the cytoplasmic protein-protein complexes of the bacterial phosphoenolpyruvate: sugar phosphotransferase system.

G Marius Clore1, Vincenzo Venditti.   

Abstract

The bacterial phosphotransferase system (PTS) couples phosphoryl transfer, via a series of bimolecular protein-protein interactions, to sugar transport across the membrane. The multitude of complexes in the PTS provides a paradigm for studying protein interactions, and for understanding how the same binding surface can specifically recognize a diverse array of targets. Fifteen years of work aimed at solving the solution structures of all soluble protein-protein complexes of the PTS has served as a test bed for developing NMR and integrated hybrid approaches to study larger complexes in solution and to probe transient, spectroscopically invisible states, including encounter complexes. We review these approaches, highlighting the problems that can be tackled with these methods, and summarize the current findings on protein interactions. Published by Elsevier Ltd.

Entities:  

Keywords:  NMR spectroscopy; bacterial phosphotransferase system; encounter complexes; hybrid methods in structure determination; protein–protein recognition; residual dipolar couplings; signal transduction; solution X-ray scattering; sparsely populated states

Mesh:

Substances:

Year:  2013        PMID: 24055245      PMCID: PMC3831880          DOI: 10.1016/j.tibs.2013.08.003

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  99 in total

1.  Enhancement of association rates by nonspecific binding to DNA and cell membranes.

Authors:  Huan-Xiang Zhou; Attila Szabo
Journal:  Phys Rev Lett       Date:  2004-10-18       Impact factor: 9.161

2.  Refinement of multidomain protein structures by combination of solution small-angle X-ray scattering and NMR data.

Authors:  Alexander Grishaev; Justin Wu; Jill Trewhella; Ad Bax
Journal:  J Am Chem Soc       Date:  2005-11-30       Impact factor: 15.419

3.  Transient state kinetics of Enzyme I of the phosphoenolpyruvate:glycose phosphotransferase system of Escherichia coli: equilibrium and second-order rate constants for the phosphotransfer reactions with phosphoenolpyruvate and HPr.

Authors:  Norman D Meadow; Roshan L Mattoo; Regina S Savtchenko; Saul Roseman
Journal:  Biochemistry       Date:  2005-09-27       Impact factor: 3.162

4.  Detecting transient intermediates in macromolecular binding by paramagnetic NMR.

Authors:  Junji Iwahara; G Marius Clore
Journal:  Nature       Date:  2006-04-27       Impact factor: 49.962

5.  Solution structure of a post-transition state analog of the phosphotransfer reaction between the A and B cytoplasmic domains of the mannitol transporter IIMannitol of the Escherichia coli phosphotransferase system.

Authors:  Jeong-Yong Suh; Mengli Cai; David C Williams; G Marius Clore
Journal:  J Biol Chem       Date:  2006-01-28       Impact factor: 5.157

6.  Solution structure of enzyme IIA(Chitobiose) from the N,N'-diacetylchitobiose branch of the Escherichia coli phosphotransferase system.

Authors:  Chun Tang; David C Williams; Rodolfo Ghirlando; G Marius Clore
Journal:  J Biol Chem       Date:  2005-01-14       Impact factor: 5.157

7.  Visualization of the phosphorylated active site loop of the cytoplasmic B domain of the mannitol transporter II(Mannitol) of the Escherichia coli phosphotransferase system by NMR spectroscopy and residual dipolar couplings.

Authors:  Jeong-Yong Suh; Chun Tang; Mengli Cai; G Marius Clore
Journal:  J Mol Biol       Date:  2005-09-28       Impact factor: 5.469

8.  Solution NMR structure of the 48-kDa IIAMannose-HPr complex of the Escherichia coli mannose phosphotransferase system.

Authors:  David C Williams; Mengli Cai; Jeong-Yong Suh; Alan Peterkofsky; G Marius Clore
Journal:  J Biol Chem       Date:  2005-03-23       Impact factor: 5.157

9.  Crystal structure of the phosphoenolpyruvate-binding enzyme I-domain from the Thermoanaerobacter tengcongensis PEP: sugar phosphotransferase system (PTS).

Authors:  Anselm Erich Oberholzer; Mario Bumann; Philipp Schneider; Christoph Bächler; Christian Siebold; Ulrich Baumann; Bernhard Erni
Journal:  J Mol Biol       Date:  2004-12-22       Impact factor: 5.469

10.  Properties of the C-terminal domain of enzyme I of the Escherichia coli phosphotransferase system.

Authors:  Himatkumar V Patel; Kavita A Vyas; Roshan L Mattoo; Maurice Southworth; Francine B Perler; Donald Comb; Saul Roseman
Journal:  J Biol Chem       Date:  2006-03-19       Impact factor: 5.157

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  24 in total

1.  Profile of Marius Clore.

Authors:  Christopher Samoray
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-31       Impact factor: 11.205

Review 2.  Practical Aspects of Paramagnetic Relaxation Enhancement in Biological Macromolecules.

Authors:  G Marius Clore
Journal:  Methods Enzymol       Date:  2015-07-02       Impact factor: 1.600

3.  Biophysical characterization of the domain association between cytosolic A and B domains of the mannitol transporter enzymes II(Mtl) in the presence and absence of a connecting linker.

Authors:  Ko On Lee; Eun-Hee Kim; Gowoon Kim; Jea Yeon Jung; Shigeru Katayama; Soichiro Nakamura; Jeong-Yong Suh
Journal:  Protein Sci       Date:  2016-08-01       Impact factor: 6.725

4.  The oligomerization state of bacterial enzyme I (EI) determines EI's allosteric stimulation or competitive inhibition by α-ketoglutarate.

Authors:  Trang T Nguyen; Rodolfo Ghirlando; Vincenzo Venditti
Journal:  J Biol Chem       Date:  2018-01-09       Impact factor: 5.157

5.  Hybrid Thermophilic/Mesophilic Enzymes Reveal a Role for Conformational Disorder in Regulation of Bacterial Enzyme I.

Authors:  Rochelle R Dotas; Trang T Nguyen; Charles E Stewart; Rodolfo Ghirlando; Davit A Potoyan; Vincenzo Venditti
Journal:  J Mol Biol       Date:  2020-06-03       Impact factor: 5.469

6.  Model of a Kinetically Driven Crosstalk between Paralogous Protein Encounter Complexes.

Authors:  Seyit Kale; Madeleine Strickland; Alan Peterkofsky; Jian Liu; Nico Tjandra
Journal:  Biophys J       Date:  2019-10-02       Impact factor: 4.033

7.  Competing Ligands Can Both Obstruct and Enhance Protein-Complex Formation.

Authors:  Gideon Schreiber
Journal:  Biophys J       Date:  2019-10-02       Impact factor: 4.033

8.  Lanthanoid tagging via an unnatural amino acid for protein structure characterization.

Authors:  Wen-Xue Jiang; Xin-Hua Gu; Xu Dong; Chun Tang
Journal:  J Biomol NMR       Date:  2017-04-01       Impact factor: 2.835

9.  Synthesis and Physicochemical Characterization of D-Tagatose-1-Phosphate: The Substrate of the Tagatose-1-Phosphate Kinase in the Phosphotransferase System-Mediated D-Tagatose Catabolic Pathway of Bacillus licheniformis.

Authors:  Edwige Van der Heiden; Michaël Delmarcelle; Patricia Simon; Melody Counson; Moreno Galleni; Darón I Freedberg; John Thompson; Bernard Joris; Marcos D Battistel
Journal:  J Mol Microbiol Biotechnol       Date:  2015-07-09

Review 10.  Hybrid Approaches to Structural Characterization of Conformational Ensembles of Complex Macromolecular Systems Combining NMR Residual Dipolar Couplings and Solution X-ray Scattering.

Authors:  Vincenzo Venditti; Timothy K Egner; G Marius Clore
Journal:  Chem Rev       Date:  2016-01-07       Impact factor: 60.622

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