Literature DB >> 18211869

Estimation of quantitative genetic parameters.

Robin Thompson1.   

Abstract

This paper gives a short review of the development of genetic parameter estimation over the last 40 years. The need to analyse genetic processes in both animal selection experiments and animal breeding improvement programmes motivated the majority of this work. The usage of animal model in conjunction with residual maximum likelihood (REML) techniques for mixed models has revolutionized the methods. These methods to estimate quantitative genetic parameters have recently been advocated for use in evolutionary studies of natural populations. Therefore, it is perhaps timely to discuss the development of REML methods and their application to the analysis of artificial selection experiments and breeding programmes in animals. This should give extra insight into the methods and hopefully lead to synergy between both the areas.

Mesh:

Year:  2008        PMID: 18211869      PMCID: PMC2392985          DOI: 10.1098/rspb.2007.1417

Source DB:  PubMed          Journal:  Proc Biol Sci        ISSN: 0962-8452            Impact factor:   5.349


  14 in total

1.  Best linear unbiased estimation and prediction under a selection model.

Authors:  C R Henderson
Journal:  Biometrics       Date:  1975-06       Impact factor: 2.571

2.  Multivariate Bayesian analysis of Gaussian, right censored Gaussian, ordered categorical and binary traits using Gibbs sampling.

Authors:  Inge Riis Korsgaard; Mogens Sandø Lund; Daniel Sorensen; Daniel Gianola; Per Madsen; Just Jensen
Journal:  Genet Sel Evol       Date:  2003 Mar-Apr       Impact factor: 4.297

Review 3.  Estimation of quantitative genetic parameters.

Authors:  Robin Thompson; Sue Brotherstone; Ian M S White
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-07-29       Impact factor: 6.237

4.  Multilevel selection 2: Estimating the genetic parameters determining inheritance and response to selection.

Authors:  Piter Bijma; William M Muir; Esther D Ellen; Jason B Wolf; Johan A M Van Arendonk
Journal:  Genetics       Date:  2006-11-16       Impact factor: 4.562

5.  A bivariate quantitative genetic model for a linear Gaussian trait and a survival trait.

Authors:  Lars Holm Damgaard; Inge Riis Korsgaard
Journal:  Genet Sel Evol       Date:  2006 Jan-Feb       Impact factor: 4.297

6.  Estimating evolutionary parameters when viability selection is operating.

Authors:  Jarrod D Hadfield
Journal:  Proc Biol Sci       Date:  2008-03-22       Impact factor: 5.349

7.  An interative procedure for estimating fixed effects and variance components in mixed model situations.

Authors:  E P Cunnungham; C R Henderson
Journal:  Biometrics       Date:  1968-03       Impact factor: 2.571

8.  Selection and covariance.

Authors:  G R Price
Journal:  Nature       Date:  1970-08-01       Impact factor: 49.962

9.  Monte Carlo estimation of mixed models for large complex pedigrees.

Authors:  S W Guo; E A Thompson
Journal:  Biometrics       Date:  1994-06       Impact factor: 2.571

10.  Maximum likelihood estimation of variance components for a multivariate mixed model with equal design matrices.

Authors:  K Meyer
Journal:  Biometrics       Date:  1985-03       Impact factor: 2.571

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  20 in total

1.  Integrating Nonadditive Genomic Relationship Matrices into the Study of Genetic Architecture of Complex Traits.

Authors:  Alireza Nazarian; Salvador A Gezan
Journal:  J Hered       Date:  2015-12-27       Impact factor: 2.645

2.  Introduction. Evolutionary dynamics of wild populations: the use of long-term pedigree data.

Authors:  L E B Kruuk; W G Hill
Journal:  Proc Biol Sci       Date:  2008-03-22       Impact factor: 5.349

Review 3.  Applications of population genetics to animal breeding, from wright, fisher and lush to genomic prediction.

Authors:  William G Hill
Journal:  Genetics       Date:  2014-01       Impact factor: 4.562

4.  Detecting Adaptive Differentiation in Structured Populations with Genomic Data and Common Gardens.

Authors:  Emily B Josephs; Jeremy J Berg; Jeffrey Ross-Ibarra; Graham Coop
Journal:  Genetics       Date:  2019-01-24       Impact factor: 4.562

Review 5.  Fine-mapping QTLs in advanced intercross lines and other outbred populations.

Authors:  Natalia M Gonzales; Abraham A Palmer
Journal:  Mamm Genome       Date:  2014-06-07       Impact factor: 2.957

6.  A kernel of truth: statistical advances in polygenic variance component models for complex human pedigrees.

Authors:  John Blangero; Vincent P Diego; Thomas D Dyer; Marcio Almeida; Juan Peralta; Jack W Kent; Jeff T Williams; Laura Almasy; Harald H H Göring
Journal:  Adv Genet       Date:  2013       Impact factor: 1.944

7.  Gene and QTL detection in a three-way barley cross under selection by a mixed model with kinship information using SNPs.

Authors:  Marcos Malosetti; Fred A van Eeuwijk; Martin P Boer; Ana M Casas; Mónica Elía; Marian Moralejo; Prasanna R Bhat; Luke Ramsay; José-Luis Molina-Cano
Journal:  Theor Appl Genet       Date:  2011-03-04       Impact factor: 5.699

Review 8.  Measuring natural selection on genotypes and phenotypes in the wild.

Authors:  C R Linnen; H E Hoekstra
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2010-04-22

9.  Evaluating gene expression dynamics using pairwise RNA FISH data.

Authors:  Matthieu Wyart; David Botstein; Ned S Wingreen
Journal:  PLoS Comput Biol       Date:  2010-11-04       Impact factor: 4.475

10.  Understanding and using quantitative genetic variation.

Authors:  William G Hill
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-01-12       Impact factor: 6.237

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