Literature DB >> 16048789

Estimation of quantitative genetic parameters.

Robin Thompson1, Sue Brotherstone, Ian M S White.   

Abstract

This paper gives a short review of the development of genetic parameter estimation over the last 40 years. This shows the development of more statistically and computationally efficient methods that allow the fitting of more biologically appropriate models. Methods have evolved from direct methods based on covariances between relatives to methods based on individual animal models. Maximum-likelihood methods have a natural interpretation in terms of best linear unbiased predictors. Improvements in iterative schemes to give estimates are discussed. As an example, a recent estimation of genetic parameters for a British population of dairy cattle is discussed. The development makes a connection to relevant work by Bill Hill.

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Year:  2005        PMID: 16048789      PMCID: PMC1569516          DOI: 10.1098/rstb.2005.1676

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  18 in total

1.  Fine mapping of quantitative trait loci using linkage disequilibria with closely linked marker loci.

Authors:  T H Meuwissen; M E Goddard
Journal:  Genetics       Date:  2000-05       Impact factor: 4.562

2.  Comparison of restricted maximum likelihood and method R for estimating heritability and predicting breeding value under selection.

Authors:  R J Cantet; A N Birchmeier; M G Santos-Cristal; V S de Avila
Journal:  J Anim Sci       Date:  2000-10       Impact factor: 3.159

Review 3.  Up hill, down dale: quantitative genetics of curvaceous traits.

Authors:  Karin Meyer; Mark Kirkpatrick
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-07-29       Impact factor: 6.237

4.  Estimation of heritability by both regression of offspring on parent and intra-class correlation of sibs in one experiment.

Authors:  W G Hill; F W Nicholas
Journal:  Biometrics       Date:  1974-09       Impact factor: 2.571

5.  Three methods to validate the estimation of genetic trend for dairy cattle.

Authors:  D Boichard; B Bonaiti; A Barbat; S Mattalia
Journal:  J Dairy Sci       Date:  1995-02       Impact factor: 4.034

6.  Multiple-country comparison of dairy sires.

Authors:  L R Schaeffer
Journal:  J Dairy Sci       Date:  1994-09       Impact factor: 4.034

7.  Monte Carlo estimation of mixed models for large complex pedigrees.

Authors:  S W Guo; E A Thompson
Journal:  Biometrics       Date:  1994-06       Impact factor: 2.571

8.  Maximum likelihood estimation of variance components for a multivariate mixed model with equal design matrices.

Authors:  K Meyer
Journal:  Biometrics       Date:  1985-03       Impact factor: 2.571

9.  Comparison of computing properties of derivative and derivative-free algorithms in variance-component estimation by REML.

Authors:  I Misztal
Journal:  J Anim Breed Genet       Date:  1994-01-12       Impact factor: 2.380

10.  Alternative implementations of Monte Carlo EM algorithms for likelihood inferences.

Authors:  L A García-Cortés; D Sorensen
Journal:  Genet Sel Evol       Date:  2001 Jul-Aug       Impact factor: 4.297

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  14 in total

1.  Better estimates of genetic covariance matrices by "bending" using penalized maximum likelihood.

Authors:  Karin Meyer; Mark Kirkpatrick
Journal:  Genetics       Date:  2010-05-03       Impact factor: 4.562

2.  WOMBAT: a tool for mixed model analyses in quantitative genetics by restricted maximum likelihood (REML).

Authors:  Karin Meyer
Journal:  J Zhejiang Univ Sci B       Date:  2007-11       Impact factor: 3.066

Review 3.  Estimation of quantitative genetic parameters.

Authors:  Robin Thompson
Journal:  Proc Biol Sci       Date:  2008-03-22       Impact factor: 5.349

4.  A hierarchical Bayesian model for a novel sparse partial diallel crossing design.

Authors:  Anthony J Greenberg; Sean R Hackett; Lawrence G Harshman; Andrew G Clark
Journal:  Genetics       Date:  2010-02-15       Impact factor: 4.562

Review 5.  Design Automation in Synthetic Biology.

Authors:  Evan Appleton; Curtis Madsen; Nicholas Roehner; Douglas Densmore
Journal:  Cold Spring Harb Perspect Biol       Date:  2017-04-03       Impact factor: 10.005

6.  Simple Penalties on Maximum-Likelihood Estimates of Genetic Parameters to Reduce Sampling Variation.

Authors:  Karin Meyer
Journal:  Genetics       Date:  2016-06-17       Impact factor: 4.562

7.  Performance of penalized maximum likelihood in estimation of genetic covariances matrices.

Authors:  Karin Meyer
Journal:  Genet Sel Evol       Date:  2011-11-27       Impact factor: 4.297

8.  The contribution of viral genotype to plasma viral set-point in HIV infection.

Authors:  Emma Hodcroft; Jarrod D Hadfield; Esther Fearnhill; Andrew Phillips; David Dunn; Siobhan O'Shea; Deenan Pillay; Andrew J Leigh Brown
Journal:  PLoS Pathog       Date:  2014-05-01       Impact factor: 6.823

9.  Strategic test-day recording regimes to estimate lactation yield in tropical dairy animals.

Authors:  David M McGill; Peter C Thomson; Herman A Mulder; Jan J Lievaart
Journal:  Genet Sel Evol       Date:  2014-12-02       Impact factor: 4.297

10.  The environmental zero-point problem in evolutionary reaction norm modeling.

Authors:  Rolf Ergon
Journal:  Ecol Evol       Date:  2018-03-25       Impact factor: 2.912

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