Literature DB >> 18407660

Low-frequency dynamics of Caldariomyces fumago chloroperoxidase probed by femtosecond coherence spectroscopy.

Flaviu Gruia1, Dan Ionascu, Minoru Kubo, Xiong Ye, John Dawson, Robert L Osborne, S G Sligar, Ilia Denisov, Aditi Das, T L Poulos, James Terner, Paul M Champion.   

Abstract

Ultrafast laser spectroscopy techniques are used to measure the low-frequency vibrational coherence spectra and nitric oxide rebinding kinetics of Caldariomyces fumago chloroperoxidase (CPO). Comparisons of the CPO coherence spectra with those of other heme species are made to gauge the protein-specific nature of the low-frequency spectra. The coherence spectrum of native CPO is dominated by a mode that appears near 32-33 cm(-1) at all excitation wavelengths, with a phase that is consistent with a ground-state Raman-excited vibrational wavepacket. On the basis of a normal coordinate structural decomposition (NSD) analysis, we assign this feature to the thiolate-bound heme doming mode. Spectral resolution of the probe pulse ("detuned" detection) reveals a mode at 349 cm(-1), which has been previously assigned using Raman spectroscopy to the Fe-S stretching mode of native CPO. The ferrous species displays a larger degree of spectral inhomogeneity than the ferric species, as reflected by multiple shoulders in the optical absorption spectra. The inhomogeneities are revealed by changes in the coherence spectra at different excitation wavelengths. The appearance of a mode close to 220 cm(-1) in the coherence spectrum of reduced CPO excited at 440 nm suggests that a subpopulation of five coordinated histidine-ligated hemes is present in the ferrous state at a physiologically relevant pH. A significant increase in the amplitude of the coherence signal is observed for the resonance with the 440 nm subpopulation. Kinetics measurements reveal that nitric oxide binding to ferric and ferrous CPO can be described as a single-exponential process, with rebinding time constants of 29.4 +/- 1 and 9.3 +/- 1 ps, respectively. This is very similar to results previously reported for nitric oxide binding to horseradish peroxidase.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18407660      PMCID: PMC2766418          DOI: 10.1021/bi7025485

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  44 in total

1.  Letter: Chloroperoxidase. Evidence for P-450 type heme environment from magnetic circular dichroism spectroscopy.

Authors:  J H Dawson; J R Trudell; G Barth; R E Linder; E Bunnenberg; C Djerassi; R Chiang; L P Hager
Journal:  J Am Chem Soc       Date:  1976-06-09       Impact factor: 15.419

2.  Mössbauer investigations of chloroperoxidase and its halide complexes.

Authors:  P M Champion; E Münck; P G Debrunner; P F Hollenberg; L P Hager
Journal:  Biochemistry       Date:  1973-01-30       Impact factor: 3.162

3.  The P-450 nature of the carbon monoxide complex of ferrous chloroperoxidase.

Authors:  P F Hollenberg; L P Hager
Journal:  J Biol Chem       Date:  1973-04-10       Impact factor: 5.157

4.  Purification of chloroperoxidase from Caldariomyces fumago.

Authors:  P F Hallenberg; L P Hager
Journal:  Methods Enzymol       Date:  1978       Impact factor: 1.600

5.  Characterization of the oxygenated intermediate of the thermophilic cytochrome P450 CYP119.

Authors:  I G Denisov; S C Hung; K E Weiss; M A McLean; Y Shiro; S Y Park; P M Champion; S G Sligar
Journal:  J Inorg Biochem       Date:  2001-12-15       Impact factor: 4.155

6.  Chloroperoxidase. II. Utilization of halogen anions.

Authors:  L P Hager; D R Morris; F S Brown; H Eberwein
Journal:  J Biol Chem       Date:  1966-04-25       Impact factor: 5.157

7.  Chloroperoxidase. I. Isolation and properties of the crystalline glycoprotein.

Authors:  D R Morris; L P Hager
Journal:  J Biol Chem       Date:  1966-04-25       Impact factor: 5.157

8.  Ligand binding and protein dynamics in neuroglobin.

Authors:  Jan M Kriegl; Aninda J Bhattacharyya; Karin Nienhaus; Pengchi Deng; Oleksandr Minkow; G Ulrich Nienhaus
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-04       Impact factor: 11.205

Review 9.  Peroxidase-catalyzed halogenation.

Authors:  M Morrison; G R Schonbaum
Journal:  Annu Rev Biochem       Date:  1976       Impact factor: 23.643

10.  Crystal structure of the cytochrome p450cam mutant that exhibits the same spectral perturbations induced by putidaredoxin binding.

Authors:  Shingo Nagano; Takehiko Tosha; Koichiro Ishimori; Isao Morishima; Thomas L Poulos
Journal:  J Biol Chem       Date:  2004-07-21       Impact factor: 5.157

View more
  10 in total

1.  Vibrational coherence spectroscopy of the heme domain in the CO-sensing transcriptional activator CooA.

Authors:  Venugopal Karunakaran; Abdelkrim Benabbas; Hwan Youn; Paul M Champion
Journal:  J Am Chem Soc       Date:  2011-10-28       Impact factor: 15.419

2.  Investigations of heme ligation and ligand switching in cytochromes p450 and p420.

Authors:  Yuhan Sun; Weiqiao Zeng; Abdelkrim Benabbas; Xin Ye; Ilia Denisov; Stephen G Sligar; Jing Du; John H Dawson; Paul M Champion
Journal:  Biochemistry       Date:  2013-08-14       Impact factor: 3.162

Review 3.  Spectroscopic features of cytochrome P450 reaction intermediates.

Authors:  Abhinav Luthra; Ilia G Denisov; Stephen G Sligar
Journal:  Arch Biochem Biophys       Date:  2010-12-16       Impact factor: 4.013

4.  Investigations of low-frequency vibrational dynamics and ligand binding kinetics of cystathionine beta-synthase.

Authors:  Venugopal Karunakaran; Abdelkrim Benabbas; Yuhan Sun; Zhenyu Zhang; Sangita Singh; Ruma Banerjee; Paul M Champion
Journal:  J Phys Chem B       Date:  2010-03-11       Impact factor: 2.991

5.  Enantiospecificity of chloroperoxidase-catalyzed epoxidation: biased molecular dynamics study of a cis-β-methylstyrene/chloroperoxidase-compound I complex.

Authors:  Alexander N Morozov; Cassian D'Cunha; Carlos A Alvarez; David C Chatfield
Journal:  Biophys J       Date:  2011-02-16       Impact factor: 4.033

6.  Observation of terahertz vibrations in the nitrogenase FeMo cofactor by femtosecond pump-probe spectroscopy.

Authors:  Ines Delfino; Giulio Cerullo; Salvatore Cannistraro; Cristian Manzoni; Dario Polli; Christie Dapper; William E Newton; Yisong Guo; Stephen P Cramer
Journal:  Angew Chem Int Ed Engl       Date:  2010-05-25       Impact factor: 15.336

7.  Investigation of the low frequency dynamics of heme proteins: native and mutant cytochrome P450(cam) and redox partner complexes.

Authors:  Venugopal Karunakaran; Ilia Denisov; Stephen G Sligar; Paul M Champion
Journal:  J Phys Chem B       Date:  2011-03-10       Impact factor: 2.991

8.  Investigations of the low-frequency spectral density of cytochrome c upon equilibrium unfolding.

Authors:  Yuhan Sun; Venugopal Karunakaran; Paul M Champion
Journal:  J Phys Chem B       Date:  2013-08-07       Impact factor: 2.991

9.  Low-frequency mode activity of heme: femtosecond coherence spectroscopy of iron porphine halides and nitrophorin.

Authors:  Minoru Kubo; Flaviu Gruia; Abdelkrim Benabbas; Alexander Barabanschikov; William R Montfort; Estelle M Maes; Paul M Champion
Journal:  J Am Chem Soc       Date:  2008-07-03       Impact factor: 15.419

10.  How the Proximal Pocket May Influence the Enantiospecificities of Chloroperoxidase-Catalyzed Epoxidations of Olefins.

Authors:  Alexander N Morozov; David C Chatfield
Journal:  Int J Mol Sci       Date:  2016-08-09       Impact factor: 5.923

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.