Literature DB >> 24753591

Investigations of heme distortion, low-frequency vibrational excitations, and electron transfer in cytochrome c.

Yuhan Sun1, Abdelkrim Benabbas, Weiqiao Zeng, Jesse G Kleingardner, Kara L Bren, Paul M Champion.   

Abstract

Cytochrome (cyt) c is an important electron transfer protein. The ruffling deformation of its heme cofactor has been suggested to relate to its electron transfer rate. However, there is no direct experimental evidence demonstrating this correlation. In this work, we studied Pseudomonas aeruginosa cytochrome c551 and its F7A mutant. These two proteins, although similar in their X-ray crystal structure, display a significant difference in their heme out-of-plane deformations, mainly along the ruffling coordinate. Resonance Raman and vibrational coherence measurements also indicate significant differences in ruffling-sensitive modes, particularly the low-frequency γa mode found between ∼50-60 cm(-1). This supports previous assignments of γa as having a large ruffling content. Measurement of the photoreduction kinetics finds an order of magnitude decrease of the photoreduction cross-section in the F7A mutant, which has nearly twice the ruffling deformation as the WT. Additional measurements on cytochrome c demonstrate that heme ruffling is correlated exponentially with the electron transfer rates and suggest that ruffling could play an important role in redox control. A major relaxation of heme ruffling in cytochrome c, upon binding to the mitochondrial membrane, is discussed in this context.

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Year:  2014        PMID: 24753591      PMCID: PMC4020103          DOI: 10.1073/pnas.1322274111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

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3.  Coherence spectroscopy investigations of the low-frequency vibrations of heme: effects of protein-specific perturbations.

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Journal:  J Am Chem Soc       Date:  2008-03-20       Impact factor: 15.419

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Authors:  Shin-ichi J Takayama; Kiyofumi Irie; Hulin Tai; Takumi Kawahara; Shun Hirota; Teruhiro Takabe; Luis A Alcaraz; Antonio Donaire; Yasuhiko Yamamoto
Journal:  J Biol Inorg Chem       Date:  2009-03-18       Impact factor: 3.358

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Journal:  Annu Rev Biochem       Date:  1979       Impact factor: 23.643

6.  Structure of cytochrome c551 from Pseudomonas aeruginosa refined at 1.6 A resolution and comparison of the two redox forms.

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Journal:  J Mol Biol       Date:  1982-04-05       Impact factor: 5.469

7.  Resonance Raman investigation of nickel microperoxidase-11.

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Journal:  Chem Phys Lett       Date:  2009-11-24       Impact factor: 2.328

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Authors:  Flaviu Gruia; Minoru Kubo; Xiong Ye; Paul M Champion
Journal:  Biophys J       Date:  2007-12-07       Impact factor: 4.033

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  17 in total

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Journal:  Biomolecules       Date:  2022-05-04

3.  Spectral Characterization of a Novel NO Sensing Protein in Bacteria: NosP.

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4.  Hydrogen bond donation to the heme distal ligand of Staphylococcus aureus IsdG tunes the electronic structure.

Authors:  Cheryl L Lockhart; Matthew A Conger; Dylanger S Pittman; Matthew D Liptak
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5.  Influence of heme c attachment on heme conformation and potential.

Authors:  Jesse G Kleingardner; Benjamin D Levin; Giorgio Zoppellaro; K Kristoffer Andersson; Sean J Elliott; Kara L Bren
Journal:  J Biol Inorg Chem       Date:  2018-08-24       Impact factor: 3.358

6.  Effects of protein structure on iron-polypeptide vibrational dynamic coupling in cytochrome c.

Authors:  Mary Grace I Galinato; Sarah E J Bowman; Jesse G Kleingardner; Sherri Martin; Jiyong Zhao; Wolfgang Sturhahn; E Ercan Alp; Kara L Bren; Nicolai Lehnert
Journal:  Biochemistry       Date:  2015-01-16       Impact factor: 3.162

7.  SERR Spectroelectrochemical Study of Cytochrome cd1 Nitrite Reductase Co-Immobilized with Physiological Redox Partner Cytochrome c552 on Biocompatible Metal Electrodes.

Authors:  Célia M Silveira; Pedro O Quintas; Isabel Moura; José J G Moura; Peter Hildebrandt; M Gabriela Almeida; Smilja Todorovic
Journal:  PLoS One       Date:  2015-06-19       Impact factor: 3.240

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9.  Comparison of the backbone dynamics of wild-type Hydrogenobacter thermophilus cytochrome c(552) and its b-type variant.

Authors:  Kaeko Tozawa; Stuart J Ferguson; Christina Redfield; Lorna J Smith
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10.  Investigations of the low frequency modes of ferric cytochrome c using vibrational coherence spectroscopy.

Authors:  Venugopal Karunakaran; Yuhan Sun; Abdelkrim Benabbas; Paul M Champion
Journal:  J Phys Chem B       Date:  2014-05-30       Impact factor: 2.991

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