Literature DB >> 17964135

Strategies for crystallization and structure determination of very large macromolecular assemblies.

Marcus Mueller1, Simon Jenni, Nenad Ban.   

Abstract

High-resolution structures of macromolecular assemblies are pivotal for our understanding of their biological functions in fundamental cellular processes. In the field of X-ray crystallography, recent methodological and instrumental advances have led to the structure determinations of macromolecular assemblies of increased size and complexity, such as those of ribosomal complexes, RNA polymerases, and large multifunctional enzymes. These advances include the use of robotic screening techniques that maximize the chances of obtaining well-diffracting crystals of large complexes through the fine sampling of crystallization space. Sophisticated crystal optimization and cryoprotection techniques and the use of highly brilliant X-ray beams from third-generation synchrotron light sources now allow data collection from weakly diffracting crystals with large asymmetric units. Combined approaches are used to derive phase information, including phases calculated from electron microscopy (EM) models, heavy atom clusters, and density modification protocols. New crystallographic software tools prove valuable for structure determination and model refinement of large macromolecular complexes.

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Year:  2007        PMID: 17964135     DOI: 10.1016/j.sbi.2007.09.004

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  16 in total

1.  The effect of ionic strength, temperature, and pressure on the interaction potential of dense protein solutions: from nonlinear pressure response to protein crystallization.

Authors:  Johannes Möller; Martin A Schroer; Mirko Erlkamp; Sebastian Grobelny; Michael Paulus; Sebastian Tiemeyer; Florian J Wirkert; Metin Tolan; Roland Winter
Journal:  Biophys J       Date:  2012-06-05       Impact factor: 4.033

2.  Biocrystallography: past, present, future.

Authors:  Richard Giegé; Claude Sauter
Journal:  HFSP J       Date:  2010-04-22

3.  X-ray diffraction from membrane protein nanocrystals.

Authors:  M S Hunter; D P DePonte; D A Shapiro; R A Kirian; X Wang; D Starodub; S Marchesini; U Weierstall; R B Doak; J C H Spence; P Fromme
Journal:  Biophys J       Date:  2011-01-05       Impact factor: 4.033

4.  In vivo protein crystallization opens new routes in structural biology.

Authors:  Rudolf Koopmann; Karolina Cupelli; Lars Redecke; Karol Nass; Daniel P Deponte; Thomas A White; Francesco Stellato; Dirk Rehders; Mengning Liang; Jakob Andreasson; Andrew Aquila; Sasa Bajt; Miriam Barthelmess; Anton Barty; Michael J Bogan; Christoph Bostedt; Sébastien Boutet; John D Bozek; Carl Caleman; Nicola Coppola; Jan Davidsson; R Bruce Doak; Tomas Ekeberg; Sascha W Epp; Benjamin Erk; Holger Fleckenstein; Lutz Foucar; Heinz Graafsma; Lars Gumprecht; Janos Hajdu; Christina Y Hampton; Andreas Hartmann; Robert Hartmann; Günter Hauser; Helmut Hirsemann; Peter Holl; Mark S Hunter; Stephan Kassemeyer; Richard A Kirian; Lukas Lomb; Filipe R N C Maia; Nils Kimmel; Andrew V Martin; Marc Messerschmidt; Christian Reich; Daniel Rolles; Benedikt Rudek; Artem Rudenko; Ilme Schlichting; Joachim Schulz; M Marvin Seibert; Robert L Shoeman; Raymond G Sierra; Heike Soltau; Stephan Stern; Lothar Strüder; Nicusor Timneanu; Joachim Ullrich; Xiaoyu Wang; Georg Weidenspointner; Uwe Weierstall; Garth J Williams; Cornelia B Wunderer; Petra Fromme; John C H Spence; Thilo Stehle; Henry N Chapman; Christian Betzel; Michael Duszenko
Journal:  Nat Methods       Date:  2012-01-29       Impact factor: 28.547

5.  Computational reconstruction of multidomain proteins using atomic force microscopy data.

Authors:  Minh-Hieu Trinh; Michael Odorico; Michael E Pique; Jean-Marie Teulon; Victoria A Roberts; Lynn F Ten Eyck; Elizabeth D Getzoff; Pierre Parot; Shu-Wen W Chen; Jean-Luc Pellequer
Journal:  Structure       Date:  2012-01-11       Impact factor: 5.006

Review 6.  Toward structure determination using membrane-protein nanocrystals and microcrystals.

Authors:  Mark S Hunter; Petra Fromme
Journal:  Methods       Date:  2011-12-22       Impact factor: 3.608

7.  Building macromolecular assemblies by information-driven docking: introducing the HADDOCK multibody docking server.

Authors:  Ezgi Karaca; Adrien S J Melquiond; Sjoerd J de Vries; Panagiotis L Kastritis; Alexandre M J J Bonvin
Journal:  Mol Cell Proteomics       Date:  2010-03-19       Impact factor: 5.911

8.  Synchrotron radiation: micrometer-sized x-ray beams as fine tools for macromolecular crystallography.

Authors:  Thomas R Schneider
Journal:  HFSP J       Date:  2008-10-17

9.  ProteoPlex: stability optimization of macromolecular complexes by sparse-matrix screening of chemical space.

Authors:  Ashwin Chari; David Haselbach; Jan-Martin Kirves; Juergen Ohmer; Elham Paknia; Niels Fischer; Oleg Ganichkin; Vanessa Möller; Jeremiah J Frye; Georg Petzold; Marc Jarvis; Michael Tietzel; Clemens Grimm; Jan-Michael Peters; Brenda A Schulman; Kai Tittmann; Jürgen Markl; Utz Fischer; Holger Stark
Journal:  Nat Methods       Date:  2015-08-03       Impact factor: 28.547

10.  Squeezing the most from every crystal: the fine details of data collection.

Authors:  Tobias Krojer; Ashley C W Pike; Frank von Delft
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-06-18
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