Literature DB >> 17942694

Single phage T4 DNA packaging motors exhibit large force generation, high velocity, and dynamic variability.

Derek N Fuller1, Dorian M Raymer, Vishal I Kottadiel, Venigalla B Rao, Douglas E Smith.   

Abstract

Terminase enzyme complexes, which facilitate ATP-driven DNA packaging in phages and in many eukaryotic viruses, constitute a wide and potentially diverse family of molecular motors about which little dynamic or mechanistic information is available. Here we report optical tweezers measurements of single DNA molecule packaging dynamics in phage T4, a large, tailed Escherichia coli virus that is an important model system in molecular biology. We show that a complex is formed between the empty prohead and the large terminase protein (gp17) that can capture and begin packaging a target DNA molecule within a few seconds, thus demonstrating a distinct viral assembly pathway. The motor generates forces >60 pN, similar to those measured with phage phi29, suggesting that high force generation is a common property of viral DNA packaging motors. However, the DNA translocation rate for T4 was strikingly higher than that for phi29, averaging approximately 700 bp/s and ranging up to approximately 2,000 bp/s, consistent with packaging by phage T4 of an enormous, 171-kb genome in <10 min during viral infection and implying high ATP turnover rates of >300 s(-1). The motor velocity decreased with applied load but averaged 320 bp/s at 45 pN, indicating very high power generation. Interestingly, the motor also exhibited large dynamic changes in velocity, suggesting that it can assume multiple active conformational states gearing different translocation rates. This capability, in addition to the reversible pausing and slipping capabilities that were observed, may allow phage T4 to coordinate DNA packaging with other ongoing processes, including viral DNA transcription, recombination, and repair.

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Year:  2007        PMID: 17942694      PMCID: PMC2040459          DOI: 10.1073/pnas.0704008104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  33 in total

1.  Structure of the bacteriophage phi29 DNA packaging motor.

Authors:  A A Simpson; Y Tao; P G Leiman; M O Badasso; Y He; P J Jardine; N H Olson; M C Morais; S Grimes; D L Anderson; T S Baker; M G Rossmann
Journal:  Nature       Date:  2000-12-07       Impact factor: 49.962

2.  The mechanochemistry of molecular motors.

Authors:  D Keller; C Bustamante
Journal:  Biophys J       Date:  2000-02       Impact factor: 4.033

3.  Mechanism of force generation of a viral DNA packaging motor.

Authors:  Yann R Chemla; K Aathavan; Jens Michaelis; Shelley Grimes; Paul J Jardine; Dwight L Anderson; Carlos Bustamante
Journal:  Cell       Date:  2005-09-09       Impact factor: 41.582

4.  Ever-fluctuating single enzyme molecules: Michaelis-Menten equation revisited.

Authors:  Brian P English; Wei Min; Antoine M van Oijen; Kang Taek Lee; Guobin Luo; Hongye Sun; Binny J Cherayil; S C Kou; X Sunney Xie
Journal:  Nat Chem Biol       Date:  2005-12-25       Impact factor: 15.040

5.  DNA as a metrology standard for length and force measurements with optical tweezers.

Authors:  John Peter Rickgauer; Derek N Fuller; Douglas E Smith
Journal:  Biophys J       Date:  2006-09-08       Impact factor: 4.033

6.  Viral DNA packaging studied by fluorescence correlation spectroscopy.

Authors:  Chandran R Sabanayagam; Mark Oram; Joseph R Lakowicz; Lindsay W Black
Journal:  Biophys J       Date:  2007-06-08       Impact factor: 4.033

7.  Mechanistic coupling of bacteriophage T4 DNA packaging to components of the replication-dependent late transcription machinery.

Authors:  Lindsay W Black; Guihong Peng
Journal:  J Biol Chem       Date:  2006-06-28       Impact factor: 5.157

8.  The DNA translocating ATPase of bacteriophage T4 packaging motor.

Authors:  Kiran R Kondabagil; Zhihong Zhang; Venigalla B Rao
Journal:  J Mol Biol       Date:  2006-08-25       Impact factor: 5.469

9.  Biochemical characterization of an ATPase activity associated with the large packaging subunit gp17 from bacteriophage T4.

Authors:  G Leffers; V B Rao
Journal:  J Biol Chem       Date:  2000-11-24       Impact factor: 5.157

10.  A general method for manipulating DNA sequences from any organism with optical tweezers.

Authors:  Derek N Fuller; Gregory J Gemmen; John Peter Rickgauer; Aurelie Dupont; Rachel Millin; Pierre Recouvreux; Douglas E Smith
Journal:  Nucleic Acids Res       Date:  2006-02-01       Impact factor: 16.971

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  103 in total

1.  Determination of viral capsid elastic properties from equilibrium thermal fluctuations.

Authors:  Eric R May; Charles L Brooks
Journal:  Phys Rev Lett       Date:  2011-05-02       Impact factor: 9.161

2.  Structure and function of the small terminase component of the DNA packaging machine in T4-like bacteriophages.

Authors:  Siyang Sun; Song Gao; Kiran Kondabagil; Ye Xiang; Michael G Rossmann; Venigalla B Rao
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-29       Impact factor: 11.205

3.  Structure of p22 headful packaging nuclease.

Authors:  Ankoor Roy; Gino Cingolani
Journal:  J Biol Chem       Date:  2012-06-19       Impact factor: 5.157

4.  Is the in vitro ejection of bacteriophage DNA quasistatic? A bulk to single virus study.

Authors:  N Chiaruttini; M de Frutos; E Augarde; P Boulanger; L Letellier; V Viasnoff
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

5.  Mutations altering a structurally conserved loop-helix-loop region of a viral packaging motor change DNA translocation velocity and processivity.

Authors:  James M Tsay; Jean Sippy; Damian DelToro; Benjamin T Andrews; Bonnie Draper; Venigalla Rao; Carlos E Catalano; Michael Feiss; Douglas E Smith
Journal:  J Biol Chem       Date:  2010-06-04       Impact factor: 5.157

6.  Specificity of interactions among the DNA-packaging machine components of T4-related bacteriophages.

Authors:  Song Gao; Venigalla B Rao
Journal:  J Biol Chem       Date:  2010-12-02       Impact factor: 5.157

7.  Small terminase couples viral DNA binding to genome-packaging ATPase activity.

Authors:  Ankoor Roy; Anshul Bhardwaj; Pinaki Datta; Gabriel C Lander; Gino Cingolani
Journal:  Structure       Date:  2012-07-05       Impact factor: 5.006

8.  Thermodynamic Interrogation of the Assembly of a Viral Genome Packaging Motor Complex.

Authors:  Teng-Chieh Yang; David Ortiz; Lyn'Al Nosaka; Gabriel C Lander; Carlos Enrique Catalano
Journal:  Biophys J       Date:  2015-10-20       Impact factor: 4.033

9.  The large terminase DNA packaging motor grips DNA with its ATPase domain for cleavage by the flexible nuclease domain.

Authors:  Brendan J Hilbert; Janelle A Hayes; Nicholas P Stone; Rui-Gang Xu; Brian A Kelch
Journal:  Nucleic Acids Res       Date:  2017-04-07       Impact factor: 16.971

10.  The scrunchworm hypothesis: transitions between A-DNA and B-DNA provide the driving force for genome packaging in double-stranded DNA bacteriophages.

Authors:  Stephen C Harvey
Journal:  J Struct Biol       Date:  2014-12-05       Impact factor: 2.867

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