Literature DB >> 11130079

Structure of the bacteriophage phi29 DNA packaging motor.

A A Simpson1, Y Tao, P G Leiman, M O Badasso, Y He, P J Jardine, N H Olson, M C Morais, S Grimes, D L Anderson, T S Baker, M G Rossmann.   

Abstract

Motors generating mechanical force, powered by the hydrolysis of ATP, translocate double-stranded DNA into preformed capsids (proheads) of bacterial viruses and certain animal viruses. Here we describe the motor that packages the double-stranded DNA of the Bacillus subtilis bacteriophage phi29 into a precursor capsid. We determined the structure of the head-tail connector--the central component of the phi29 DNA packaging motor--to 3.2 A resolution by means of X-ray crystallography. We then fitted the connector into the electron densities of the prohead and of the partially packaged prohead as determined using cryo-electron microscopy and image reconstruction analysis. Our results suggest that the prohead plus dodecameric connector, prohead RNA, viral ATPase and DNA comprise a rotary motor with the head-prohead RNA-ATPase complex acting as a stator, the DNA acting as a spindle, and the connector as a ball-race. The helical nature of the DNA converts the rotary action of the connector into translation of the DNA.

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Year:  2000        PMID: 11130079      PMCID: PMC4151180          DOI: 10.1038/35047129

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  27 in total

1.  The three-dimensional structure of a DNA translocating machine at 10 A resolution.

Authors:  J M Valpuesta; J J Fernández; J M Carazo; J L Carrascosa
Journal:  Structure       Date:  1999-03-15       Impact factor: 5.006

2.  Purification, crystallization and initial X-ray analysis of the head-tail connector of bacteriophage phi29.

Authors:  M O Badasso; P G Leiman; Y Tao; Y He; D H Ohlendorf; M G Rossmann; D Anderson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-09

3.  RNA dependence of the bacteriophage phi 29 DNA packaging ATPase.

Authors:  S Grimes; D Anderson
Journal:  J Mol Biol       Date:  1990-10-20       Impact factor: 5.469

4.  Function of hexameric RNA in packaging of bacteriophage phi 29 DNA in vitro.

Authors:  F Zhang; S Lemieux; X Wu; D St-Arnaud; C T McMurray; F Major; D Anderson
Journal:  Mol Cell       Date:  1998-07       Impact factor: 17.970

5.  A small viral RNA is required for in vitro packaging of bacteriophage phi 29 DNA.

Authors:  P X Guo; S Erickson; D Anderson
Journal:  Science       Date:  1987-05-08       Impact factor: 47.728

6.  Topology of the components of the DNA packaging machinery in the phage phi29 prohead.

Authors:  B Ibarra; J R Castón; O Llorca; M Valle; J M Valpuesta; J L Carrascosa
Journal:  J Mol Biol       Date:  2000-05-19       Impact factor: 5.469

7.  Flagellar rotation and the mechanism of bacterial motility.

Authors:  M Silverman; M Simon
Journal:  Nature       Date:  1974-05-03       Impact factor: 49.962

8.  Symmetry mismatch and DNA packaging in large bacteriophages.

Authors:  R W Hendrix
Journal:  Proc Natl Acad Sci U S A       Date:  1978-10       Impact factor: 11.205

9.  Prohead and DNA-gp3-dependent ATPase activity of the DNA packaging protein gp16 of bacteriophage phi 29.

Authors:  P Guo; C Peterson; D Anderson
Journal:  J Mol Biol       Date:  1987-09-20       Impact factor: 5.469

10.  Identification of bacteriophage phi 29 prohead RNA domains necessary for in vitro DNA-gp3 packaging.

Authors:  R J Reid; J W Bodley; D Anderson
Journal:  J Biol Chem       Date:  1994-03-25       Impact factor: 5.157

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  220 in total

1.  Cryoelectron-microscopy image reconstruction of symmetry mismatches in bacteriophage phi29.

Authors:  M C Morais; Y Tao; N H Olson; S Grimes; P J Jardine; D L Anderson; T S Baker; M G Rossmann
Journal:  J Struct Biol       Date:  2001-07       Impact factor: 2.867

2.  Phi29 family of phages.

Authors:  W J Meijer; J A Horcajadas; M Salas
Journal:  Microbiol Mol Biol Rev       Date:  2001-06       Impact factor: 11.056

3.  Mechanics of DNA packaging in viruses.

Authors:  Prashant K Purohit; Jané Kondev; Rob Phillips
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-10       Impact factor: 11.205

4.  The herpes simplex virus 1 UL17 protein is the second constituent of the capsid vertex-specific component required for DNA packaging and retention.

Authors:  Katerina Toropova; Jamie B Huffman; Fred L Homa; James F Conway
Journal:  J Virol       Date:  2011-06-01       Impact factor: 5.103

5.  The proteome and interactome of Streptococcus pneumoniae phage Cp-1.

Authors:  Roman Häuser; Mourad Sabri; Sylvain Moineau; Peter Uetz
Journal:  J Bacteriol       Date:  2011-04-22       Impact factor: 3.490

6.  A rotary pumping model for helicase function of MCM proteins at a distance from replication forks.

Authors:  Ronald A Laskey; Mark A Madine
Journal:  EMBO Rep       Date:  2003-01       Impact factor: 8.807

7.  Single pilus motor forces exceed 100 pN.

Authors:  Berenike Maier; Laura Potter; Magdalene So; Cynthia D Long; Hank S Seifert; Michael P Sheetz
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-22       Impact factor: 11.205

8.  The tailless icosahedral membrane virus PRD1 localizes the proteins involved in genome packaging and injection at a unique vertex.

Authors:  Brent Gowen; Jaana K H Bamford; Dennis H Bamford; Stephen D Fuller
Journal:  J Virol       Date:  2003-07       Impact factor: 5.103

9.  A P22 scaffold protein mutation increases the robustness of head assembly in the presence of excess portal protein.

Authors:  Sean D Moore; Peter E Prevelige
Journal:  J Virol       Date:  2002-10       Impact factor: 5.103

10.  Sequence analysis of bacteriophage T4 DNA packaging/terminase genes 16 and 17 reveals a common ATPase center in the large subunit of viral terminases.

Authors:  Michael S Mitchell; Shigenobu Matsuzaki; Shosuke Imai; Venigalla B Rao
Journal:  Nucleic Acids Res       Date:  2002-09-15       Impact factor: 16.971

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