Literature DB >> 10653770

The mechanochemistry of molecular motors.

D Keller1, C Bustamante.   

Abstract

A theory of molecular motors is presented that explains how the energy released in single chemical reactions can generate mechanical motion and force. In the simplest case the fluctuating movements of a motor enzyme are well described by a diffusion process on a two-dimensional potential energy surface, where one dimension is a chemical reaction coordinate and the other is the spatial displacement of the motor. The coupling between chemistry and motion results from the shape of the surface, and motor velocities and forces result from diffusion currents on this surface. This microscopic description is shown to possess an equivalent kinetic mechanism in which the rate constants depend on externally applied forces. By using this equivalence we explore the characteristic properties of several broad classes of motor mechanisms and give general expressions for motor velocity versus load force for any member of each class. We show that in some cases simple plots of 1/velocity vs. 1/concentration can distinguish between classes of motor mechanisms and may be used to determine the step at which movement occurs.

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Year:  2000        PMID: 10653770      PMCID: PMC1300660          DOI: 10.1016/S0006-3495(00)76615-X

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  24 in total

1.  Fluctuation driven ratchets: Molecular motors.

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Journal:  Phys Rev Lett       Date:  1994-03-14       Impact factor: 9.161

2.  Self-consistent microscopic theory of fluctuation-induced transport.

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Journal:  Phys Rev Lett       Date:  1995-01-02       Impact factor: 9.161

3.  Ocean - in - a - machine starts looking like the real thing.

Authors:  R A Kerr
Journal:  Science       Date:  1993-04-02       Impact factor: 47.728

4.  Transcription against an applied force.

Authors:  H Yin; M D Wang; K Svoboda; R Landick; S M Block; J Gelles
Journal:  Science       Date:  1995-12-08       Impact factor: 47.728

5.  Motion of RNA polymerase along DNA: a stochastic model.

Authors:  F Jülicher; R Bruinsma
Journal:  Biophys J       Date:  1998-03       Impact factor: 4.033

6.  Force generation in RNA polymerase.

Authors:  H Y Wang; T Elston; A Mogilner; G Oster
Journal:  Biophys J       Date:  1998-03       Impact factor: 4.033

7.  Kinetics of force generation by single kinesin molecules activated by laser photolysis of caged ATP.

Authors:  H Higuchi; E Muto; Y Inoue; T Yanagida
Journal:  Proc Natl Acad Sci U S A       Date:  1997-04-29       Impact factor: 11.205

8.  Direct observation of kinesin stepping by optical trapping interferometry.

Authors:  K Svoboda; C F Schmidt; B J Schnapp; S M Block
Journal:  Nature       Date:  1993-10-21       Impact factor: 49.962

9.  A model for the mechanism of polymerase translocation.

Authors:  R Guajardo; R Sousa
Journal:  J Mol Biol       Date:  1997-01-10       Impact factor: 5.469

10.  Release of isolated single kinesin molecules from microtubules.

Authors:  Y Vugmeyster; E Berliner; J Gelles
Journal:  Biochemistry       Date:  1998-01-13       Impact factor: 3.162

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  53 in total

1.  Replication by a single DNA polymerase of a stretched single-stranded DNA.

Authors:  B Maier; D Bensimon; V Croquette
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-24       Impact factor: 11.205

2.  Protein-protein ratchets: stochastic simulation and application to processive enzymes.

Authors:  C J Brokaw
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

3.  Conformational change of the actomyosin complex drives the multiple stepping movement.

Authors:  Tomoki P Terada; Masaki Sasai; Tetsuya Yomo
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-24       Impact factor: 11.205

4.  Protein synthesis by single ribosomes.

Authors:  Francesco Vanzi; Serguei Vladimirov; Charlotte R Knudsen; Yale E Goldman; Barry S Cooperman
Journal:  RNA       Date:  2003-10       Impact factor: 4.942

Review 5.  Thermodynamics and kinetics of molecular motors.

Authors:  R Dean Astumian
Journal:  Biophys J       Date:  2010-06-02       Impact factor: 4.033

6.  Pause point spectra in DNA constant-force unzipping.

Authors:  J D Weeks; J B Lucks; Y Kafri; C Danilowicz; D R Nelson; M Prentiss
Journal:  Biophys J       Date:  2005-02-04       Impact factor: 4.033

7.  Monte Carlo modeling of single-molecule cytoplasmic dynein.

Authors:  Manoranjan P Singh; Roop Mallik; Steven P Gross; Clare C Yu
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-15       Impact factor: 11.205

8.  Maximum likelihood estimation of molecular motor kinetics from staircase dwell-time sequences.

Authors:  Lorin S Milescu; Ahmet Yildiz; Paul R Selvin; Frederick Sachs
Journal:  Biophys J       Date:  2006-05-05       Impact factor: 4.033

9.  Extracting dwell time sequences from processive molecular motor data.

Authors:  Lorin S Milescu; Ahmet Yildiz; Paul R Selvin; Frederick Sachs
Journal:  Biophys J       Date:  2006-08-11       Impact factor: 4.033

10.  Substrate-translocating loops regulate mechanochemical coupling and power production in AAA+ protease ClpXP.

Authors:  Piere Rodriguez-Aliaga; Luis Ramirez; Frank Kim; Carlos Bustamante; Andreas Martin
Journal:  Nat Struct Mol Biol       Date:  2016-09-26       Impact factor: 15.369

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