Literature DB >> 10727245

Two-dimensional structure of beta-amyloid(10-35) fibrils.

T L Benzinger1, D M Gregory, T S Burkoth, H Miller-Auer, D G Lynn, R E Botto, S C Meredith.   

Abstract

Beta-amyloid (Abeta) peptides are the main protein component of the pathognomonic plaques found in the brains of patients with Alzheimer's disease. These heterogeneous peptides adopt a highly organized fibril structure both in vivo and in vitro. Here we use solid-state NMR on stable, homogeneous fibrils of Abeta(10-35). Specific interpeptide distance constraints are determined with dipolar recoupling NMR on fibrils prepared from a series of singly labeled peptides containing (13)C-carbonyl-enriched amino acids, and skipping no more that three residues in the sequence. From these studies, we demonstrate that the peptide adopts the structure of an extended parallel beta-sheet in-register at pH 7.4. Analysis of DRAWS data indicates interstrand distances of 5.3 +/- 0.3 A (mean +/- standard deviation) throughout the entire length of the peptide, which is compatible only with a parallel beta-strand in-register. Intrastrand NMR constraints, obtained from peptides containing labels at two adjacent amino acids, confirm the secondary structural findings obtained using DRAWS. Using peptides with (13)C incorporated at the carbonyl position of adjacent amino acids, structural transitions from alpha-helix to beta-sheet were observed at residues 19 and 20, but using similar techniques, no evidence for a turn could be found in the putative turn region comprising residues 25-29. Implications of this extended parallel organization for Abeta(10-35) for overall fibril formation, stability, and morphology based upon specific amino acid contacts are discussed.

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Year:  2000        PMID: 10727245     DOI: 10.1021/bi991527v

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  54 in total

1.  Folding thermodynamics of model four-strand antiparallel beta-sheet proteins.

Authors:  Hyunbum Jang; Carol K Hall; Yaoqi Zhou
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

2.  A structural model for Alzheimer's beta -amyloid fibrils based on experimental constraints from solid state NMR.

Authors:  Aneta T Petkova; Yoshitaka Ishii; John J Balbach; Oleg N Antzutkin; Richard D Leapman; Frank Delaglio; Robert Tycko
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-12       Impact factor: 11.205

3.  Accurate determination of interstrand distances and alignment in amyloid fibrils by magic angle spinning NMR.

Authors:  Marc A Caporini; Vikram S Bajaj; Mikhail Veshtort; Anthony Fitzpatrick; Cait E MacPhee; Michele Vendruscolo; Christopher M Dobson; Robert G Griffin
Journal:  J Phys Chem B       Date:  2010-10-28       Impact factor: 2.991

4.  Thermodynamics and stability of a beta-sheet complex: molecular dynamics simulations on simplified off-lattice protein models.

Authors:  Hyunbum Jang; Carol K Hall; Yaoqi Zhou
Journal:  Protein Sci       Date:  2004-01       Impact factor: 6.725

5.  Assembly and kinetic folding pathways of a tetrameric beta-sheet complex: molecular dynamics simulations on simplified off-lattice protein models.

Authors:  Hyunbum Jang; Carol K Hall; Yaoqi Zhou
Journal:  Biophys J       Date:  2004-01       Impact factor: 4.033

6.  Freezing of a fish antifreeze protein results in amyloid fibril formation.

Authors:  Steffen P Graether; Carolyn M Slupsky; Brian D Sykes
Journal:  Biophys J       Date:  2003-01       Impact factor: 4.033

7.  Molecular dynamics simulations of alanine rich beta-sheet oligomers: Insight into amyloid formation.

Authors:  Buyong Ma; Ruth Nussinov
Journal:  Protein Sci       Date:  2002-10       Impact factor: 6.725

8.  Protein folding pathways and kinetics: molecular dynamics simulations of beta-strand motifs.

Authors:  Hyunbum Jang; Carol K Hall; Yaoqi Zhou
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

9.  Vibrational coupling, isotopic editing, and beta-sheet structure in a membrane-bound polypeptide.

Authors:  Cynthia Paul; Jianping Wang; William C Wimley; Robin M Hochstrasser; Paul H Axelsen
Journal:  J Am Chem Soc       Date:  2004-05-12       Impact factor: 15.419

10.  A model for Ure2p prion filaments and other amyloids: the parallel superpleated beta-structure.

Authors:  Andrey V Kajava; Ulrich Baxa; Reed B Wickner; Alasdair C Steven
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-13       Impact factor: 11.205

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