Literature DB >> 17868095

Importance of RNA-protein interactions in bacterial ribonuclease P structure and catalysis.

J Kristin Smith1, John Hsieh, Carol A Fierke.   

Abstract

Ribonuclease P (RNase P) is a ribonucleoprotein (RNP) complex that catalyzes the metal-dependent maturation of the 5' end of precursor tRNAs (pre-tRNAs) in all organisms. RNase P is comprised of a catalytic RNA (P RNA), and at least one essential protein (P protein). Although P RNA is the catalytic subunit of the enzyme and is active in the absence of P protein under high salt concentrations in vitro, the protein is still required for enzyme activity in vivo. Therefore, the function of the P protein and how it interacts with both P RNA and pre-tRNA have been the focus of much ongoing research. RNA-protein interactions in RNase P serve a number of critical roles in the RNP including stabilizing the structure, and enhancing the affinity for substrates and metal ions. This review examines the role of RNA-protein interactions in bacterial RNase P from both structural and mechanistic perspectives. (c) 2007 Wiley Periodicals, Inc.

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Year:  2007        PMID: 17868095     DOI: 10.1002/bip.20846

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  20 in total

1.  A divalent cation stabilizes the active conformation of the B. subtilis RNase P x pre-tRNA complex: a role for an inner-sphere metal ion in RNase P.

Authors:  John Hsieh; Kristin S Koutmou; David Rueda; Markos Koutmos; Nils G Walter; Carol A Fierke
Journal:  J Mol Biol       Date:  2010-04-29       Impact factor: 5.469

Review 2.  Of proteins and RNA: the RNase P/MRP family.

Authors:  Olga Esakova; Andrey S Krasilnikov
Journal:  RNA       Date:  2010-07-13       Impact factor: 4.942

Review 3.  Broadening the mission of an RNA enzyme.

Authors:  Michael C Marvin; David R Engelke
Journal:  J Cell Biochem       Date:  2009-12-15       Impact factor: 4.429

4.  NMR and XAS reveal an inner-sphere metal binding site in the P4 helix of the metallo-ribozyme ribonuclease P.

Authors:  Kristin S Koutmou; Anette Casiano-Negroni; Melissa M Getz; Samuel Pazicni; Andrew J Andrews; James E Penner-Hahn; Hashim M Al-Hashimi; Carol A Fierke
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-25       Impact factor: 11.205

Review 5.  Bacterial transfer RNAs.

Authors:  Jennifer Shepherd; Michael Ibba
Journal:  FEMS Microbiol Rev       Date:  2015-03-21       Impact factor: 16.408

Review 6.  Specificity and nonspecificity in RNA-protein interactions.

Authors:  Eckhard Jankowsky; Michael E Harris
Journal:  Nat Rev Mol Cell Biol       Date:  2015-08-19       Impact factor: 94.444

7.  Inner-Sphere Coordination of Divalent Metal Ion with Nucleobase in Catalytic RNA.

Authors:  Xin Liu; Yu Chen; Carol A Fierke
Journal:  J Am Chem Soc       Date:  2017-11-22       Impact factor: 15.419

Review 8.  Unexpected diversity of RNase P, an ancient tRNA processing enzyme: challenges and prospects.

Authors:  Lien B Lai; Agustín Vioque; Leif A Kirsebom; Venkat Gopalan
Journal:  FEBS Lett       Date:  2010-01-21       Impact factor: 4.124

9.  Protein-precursor tRNA contact leads to sequence-specific recognition of 5' leaders by bacterial ribonuclease P.

Authors:  Kristin S Koutmou; Nathan H Zahler; Jeffrey C Kurz; Frank E Campbell; Michael E Harris; Carol A Fierke
Journal:  J Mol Biol       Date:  2009-11-28       Impact factor: 5.469

10.  Pre-tRNA turnover catalyzed by the yeast nuclear RNase P holoenzyme is limited by product release.

Authors:  John Hsieh; Scott C Walker; Carol A Fierke; David R Engelke
Journal:  RNA       Date:  2008-12-17       Impact factor: 4.942

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