Literature DB >> 19844921

Broadening the mission of an RNA enzyme.

Michael C Marvin1, David R Engelke.   

Abstract

The "RNA World" hypothesis suggests that life developed from RNA enzymes termed ribozymes, which carry out reactions without assistance from proteins. Ribonuclease (RNase) P is one ribozyme that appears to have adapted these origins to modern cellular life by adding protein to the RNA core in order to broaden the potential functions. This RNA-protein complex plays diverse roles in processing RNA, but its best-understood reaction is pre-tRNA maturation, resulting in mature 5' ends of tRNAs. The core catalytic activity resides in the RNA subunit of almost all RNase P enzymes but broader substrate tolerance is required for recognizing not only the diverse sequences of tRNAs, but also additional cellular RNA substrates. This broader substrate tolerance is provided by the addition of protein to the RNA core and allows RNase P to selectively recognize different RNAs, and possibly ribonucleoprotein (RNP) substrates. Thus, increased protein content correlated with evolution from bacteria to eukaryotes has further enhanced substrate potential enabling the enzyme to function in a complex cellular environment. (c) 2009 Wiley-Liss, Inc.

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Year:  2009        PMID: 19844921      PMCID: PMC2800852          DOI: 10.1002/jcb.22367

Source DB:  PubMed          Journal:  J Cell Biochem        ISSN: 0730-2312            Impact factor:   4.429


  54 in total

Review 1.  Eukaryotic ribonuclease P: a plurality of ribonucleoprotein enzymes.

Authors:  Shaohua Xiao; Felicia Scott; Carol A Fierke; David R Engelke
Journal:  Annu Rev Biochem       Date:  2001-11-09       Impact factor: 23.643

2.  An active precursor in assembly of yeast nuclear ribonuclease P.

Authors:  Chatchawan Srisawat; Felicia Houser-Scott; Edouard Bertrand; Shaohua Xiao; Robert H Singer; David R Engelke
Journal:  RNA       Date:  2002-10       Impact factor: 4.942

3.  A specific endoribonuclease, RNase P, affects gene expression of polycistronic operon mRNAs.

Authors:  Yong Li; Sidney Altman
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-29       Impact factor: 11.205

4.  3' end processing of a long nuclear-retained noncoding RNA yields a tRNA-like cytoplasmic RNA.

Authors:  Jeremy E Wilusz; Susan M Freier; David L Spector
Journal:  Cell       Date:  2008-11-28       Impact factor: 41.582

Review 5.  tRNA recognition, processing, and disease: hypotheses around an unorthodox type of RNase P in human mitochondria.

Authors:  Johann Holzmann; Walter Rossmanith
Journal:  Mitochondrion       Date:  2009-04-17       Impact factor: 4.160

6.  RNase P without RNA: identification and functional reconstitution of the human mitochondrial tRNA processing enzyme.

Authors:  Johann Holzmann; Peter Frank; Esther Löffler; Keiryn L Bennett; Christopher Gerner; Walter Rossmanith
Journal:  Cell       Date:  2008-10-31       Impact factor: 41.582

7.  Life without RNase P.

Authors:  Lennart Randau; Imke Schröder; Dieter Söll
Journal:  Nature       Date:  2008-05-01       Impact factor: 49.962

Review 8.  Importance of RNA-protein interactions in bacterial ribonuclease P structure and catalysis.

Authors:  J Kristin Smith; John Hsieh; Carol A Fierke
Journal:  Biopolymers       Date:  2007 Dec 5-15       Impact factor: 2.505

9.  Pre-tRNA turnover catalyzed by the yeast nuclear RNase P holoenzyme is limited by product release.

Authors:  John Hsieh; Scott C Walker; Carol A Fierke; David R Engelke
Journal:  RNA       Date:  2008-12-17       Impact factor: 4.942

10.  Mitochondrial RNase P RNAs in ascomycete fungi: lineage-specific variations in RNA secondary structure.

Authors:  Elias R Seif; Lise Forget; Nancy C Martin; B Franz Lang
Journal:  RNA       Date:  2003-09       Impact factor: 4.942

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  23 in total

Review 1.  Of proteins and RNA: the RNase P/MRP family.

Authors:  Olga Esakova; Andrey S Krasilnikov
Journal:  RNA       Date:  2010-07-13       Impact factor: 4.942

Review 2.  Nuclear noncoding RNA surveillance: is the end in sight?

Authors:  Sandra L Wolin; Soyeong Sim; Xinguo Chen
Journal:  Trends Genet       Date:  2012-04-02       Impact factor: 11.639

3.  Binding and cleavage of unstructured RNA by nuclear RNase P.

Authors:  Michael C Marvin; Scott C Walker; Carol A Fierke; David R Engelke
Journal:  RNA       Date:  2011-06-10       Impact factor: 4.942

4.  Engineered external guide sequences effectively block viral gene expression and replication in cultured cells.

Authors:  Xiaohong Jiang; Yong Bai; Paul Rider; Kihoon Kim; Chen-Yu Zhang; Sangwei Lu; Fenyong Liu
Journal:  J Biol Chem       Date:  2010-10-27       Impact factor: 5.157

5.  Directing RNase P-mediated cleavage of target mRNAs by engineered external guide sequences in cultured cells.

Authors:  Xiaohong Jiang; Naresh Sunkara; Sangwei Lu; Fenyong Liu
Journal:  Methods Mol Biol       Date:  2014

6.  Ribonuclease P-mediated inhibition of human cytomegalovirus gene expression and replication induced by engineered external guide sequences.

Authors:  Xiaohong Jiang; Yuan-Chuan Chen; Hao Gong; Phong Trang; Sangwei Lu; Fenyong Liu
Journal:  RNA Biol       Date:  2012-09-01       Impact factor: 4.652

7.  Structural organizations of yeast RNase P and RNase MRP holoenzymes as revealed by UV-crosslinking studies of RNA-protein interactions.

Authors:  Elena Khanova; Olga Esakova; Anna Perederina; Igor Berezin; Andrey S Krasilnikov
Journal:  RNA       Date:  2012-02-13       Impact factor: 4.942

Review 8.  The emerging field of RNA nanotechnology.

Authors:  Peixuan Guo
Journal:  Nat Nanotechnol       Date:  2010-11-21       Impact factor: 39.213

9.  Engineered external guide sequences are highly effective in inhibiting gene expression and replication of hepatitis B virus in cultured cells.

Authors:  Zhigang Zhang; Gia-Phong Vu; Hao Gong; Chuan Xia; Yuan-Chuan Chen; Fenyong Liu; Jianguo Wu; Sangwei Lu
Journal:  PLoS One       Date:  2013-06-12       Impact factor: 3.240

10.  A two-piece derivative of a group I intron RNA as a platform for designing self-assembling RNA templates to promote Peptide ligation.

Authors:  Takahiro Tanaka; Hiroyuki Furuta; Yoshiya Ikawa
Journal:  J Nucleic Acids       Date:  2012-08-22
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