Literature DB >> 17707818

A hypothesis on the identification of the editing enzyme in plant organelles.

Véronique Salone1, Mareike Rüdinger, Monika Polsakiewicz, Beate Hoffmann, Milena Groth-Malonek, Boris Szurek, Ian Small, Volker Knoop, Claire Lurin.   

Abstract

RNA editing in plant organelles is an enigmatic process leading to conversion of cytidines into uridines. Editing specificity is determined by proteins; both those known so far are pentatricopeptide repeat (PPR) proteins. The enzyme catalysing RNA editing in plants is still totally unknown. We propose that the DYW domain found in many higher plant PPR proteins is the missing catalytic domain. This hypothesis is based on two compelling observations: (i) the DYW domain contains invariant residues that match the active site of cytidine deaminases; (ii) the phylogenetic distribution of the DYW domain is strictly correlated with RNA editing.

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Year:  2007        PMID: 17707818     DOI: 10.1016/j.febslet.2007.07.075

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  86 in total

1.  The rice pentatricopeptide repeat protein RF5 restores fertility in Hong-Lian cytoplasmic male-sterile lines via a complex with the glycine-rich protein GRP162.

Authors:  Jun Hu; Kun Wang; Wenchao Huang; Gai Liu; Ya Gao; Jianming Wang; Qi Huang; Yanxiao Ji; Xiaojian Qin; Lei Wan; Renshan Zhu; Shaoqing Li; Daichang Yang; Yingguo Zhu
Journal:  Plant Cell       Date:  2012-01-13       Impact factor: 11.277

2.  Mitochondrial biogenesis and function in Arabidopsis.

Authors:  A Harvey Millar; Ian D Small; David A Day; James Whelan
Journal:  Arabidopsis Book       Date:  2008-07-09

3.  Multiple organellar RNA editing factor (MORF) family proteins are required for RNA editing in mitochondria and plastids of plants.

Authors:  Mizuki Takenaka; Anja Zehrmann; Daniil Verbitskiy; Matthias Kugelmann; Barbara Härtel; Axel Brennicke
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-12       Impact factor: 11.205

4.  Extensive loss of RNA editing sites in rapidly evolving Silene mitochondrial genomes: selection vs. retroprocessing as the driving force.

Authors:  Daniel B Sloan; Alice H MacQueen; Andrew J Alverson; Jeffrey D Palmer; Douglas R Taylor
Journal:  Genetics       Date:  2010-05-17       Impact factor: 4.562

5.  Reverse genetic screening identifies five E-class PPR proteins involved in RNA editing in mitochondria of Arabidopsis thaliana.

Authors:  Mizuki Takenaka; Daniil Verbitskiy; Anja Zehrmann; Axel Brennicke
Journal:  J Biol Chem       Date:  2010-06-21       Impact factor: 5.157

Review 6.  When you can't trust the DNA: RNA editing changes transcript sequences.

Authors:  Volker Knoop
Journal:  Cell Mol Life Sci       Date:  2010-10-12       Impact factor: 9.261

7.  Nuclear DYW-type PPR gene families diversify with increasing RNA editing frequencies in liverwort and moss mitochondria.

Authors:  Mareike Rüdinger; Ute Volkmar; Henning Lenz; Milena Groth-Malonek; Volker Knoop
Journal:  J Mol Evol       Date:  2012-02       Impact factor: 2.395

8.  PPR2263, a DYW-Subgroup Pentatricopeptide repeat protein, is required for mitochondrial nad5 and cob transcript editing, mitochondrion biogenesis, and maize growth.

Authors:  Davide Sosso; Sylvie Mbelo; Vanessa Vernoud; Ghislaine Gendrot; Annick Dedieu; Pierre Chambrier; Myriam Dauzat; Laure Heurtevin; Virginie Guyon; Mizuki Takenaka; Peter M Rogowsky
Journal:  Plant Cell       Date:  2012-02-07       Impact factor: 11.277

9.  MEF9, an E-subclass pentatricopeptide repeat protein, is required for an RNA editing event in the nad7 transcript in mitochondria of Arabidopsis.

Authors:  Mizuki Takenaka
Journal:  Plant Physiol       Date:  2009-12-16       Impact factor: 8.340

10.  LPA66 is required for editing psbF chloroplast transcripts in Arabidopsis.

Authors:  Wenhe Cai; Daili Ji; Lianwei Peng; Jinkui Guo; Jinfang Ma; Meijuan Zou; Congming Lu; Lixin Zhang
Journal:  Plant Physiol       Date:  2009-05-15       Impact factor: 8.340

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