Literature DB >> 17606985

Show and tell: visualizing gene expression in living cells.

Ilona U Rafalska-Metcalf1, Susan M Janicki.   

Abstract

The development of non-invasive methods of visualizing proteins and nucleic acids in living cells has provided profound insight into how they move and interact with each other in vivo. It is possible to evaluate basic mechanisms of gene expression, and to define their temporal and spatial parameters by using this methodology to label endogenous genes and make reporter constructs that allow specific DNA and RNA regulatory elements to be localized. This Commentary highlights recent reports that have used these techniques to study nuclear organization, transcription factor dynamics and the kinetics of RNA synthesis. These studies show how imaging gene expression in single living cells can reveal new regulatory mechanisms. They also expand our understanding of the role of chromatin and RNA dynamics in modulating cellular responses to developmental and environmental signals.

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Year:  2007        PMID: 17606985     DOI: 10.1242/jcs.008664

Source DB:  PubMed          Journal:  J Cell Sci        ISSN: 0021-9533            Impact factor:   5.285


  14 in total

Review 1.  Live cell imaging and systems biology.

Authors:  Myong-Hee Sung; James G McNally
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2010-08-20

2.  Single-cell analysis of Daxx and ATRX-dependent transcriptional repression.

Authors:  Alyshia Newhart; Ilona U Rafalska-Metcalf; Tian Yang; Dmitri G Negorev; Susan M Janicki
Journal:  J Cell Sci       Date:  2012-09-12       Impact factor: 5.285

3.  Single cell analysis of transcriptional activation dynamics.

Authors:  Ilona U Rafalska-Metcalf; Sara Lawrence Powers; Lucy M Joo; Gary LeRoy; Susan M Janicki
Journal:  PLoS One       Date:  2010-04-21       Impact factor: 3.240

4.  Lamin B1 maintains the functional plasticity of nucleoli.

Authors:  Catherine Martin; Songbi Chen; Apolinar Maya-Mendoza; Josip Lovric; Paul F G Sims; Dean A Jackson
Journal:  J Cell Sci       Date:  2009-04-21       Impact factor: 5.285

5.  A wave of nascent transcription on activated human genes.

Authors:  Youichiro Wada; Yoshihiro Ohta; Meng Xu; Shuichi Tsutsumi; Takashi Minami; Kenji Inoue; Daisuke Komura; Jun'ichi Kitakami; Nobuhiko Oshida; Argyris Papantonis; Akashi Izumi; Mika Kobayashi; Hiroko Meguro; Yasuharu Kanki; Imari Mimura; Kazuki Yamamoto; Chikage Mataki; Takao Hamakubo; Katsuhiko Shirahige; Hiroyuki Aburatani; Hiroshi Kimura; Tatsuhiko Kodama; Peter R Cook; Sigeo Ihara
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-13       Impact factor: 11.205

6.  The dynamics of DNA damage repair and transcription.

Authors:  Niraj M Shanbhag; Roger A Greenberg
Journal:  Methods Mol Biol       Date:  2013

Review 7.  Seeing is believing: visualizing transcriptional dynamics in single cells.

Authors:  Alyshia Newhart; Susan M Janicki
Journal:  J Cell Physiol       Date:  2014-03       Impact factor: 6.384

Review 8.  Imaging transcription in living cells.

Authors:  Xavier Darzacq; Jie Yao; Daniel R Larson; Sébastien Z Causse; Lana Bosanac; Valeria de Turris; Vera M Ruda; Timothee Lionnet; Daniel Zenklusen; Benjamin Guglielmi; Robert Tjian; Robert H Singer
Journal:  Annu Rev Biophys       Date:  2009       Impact factor: 12.981

9.  Transcription, chromatin condensation, and gene migration.

Authors:  James G McNally
Journal:  J Cell Biol       Date:  2009-04-06       Impact factor: 10.539

10.  Quantifying the transcriptional output of single alleles in single living mammalian cells.

Authors:  Sharon Yunger; Liat Rosenfeld; Yuval Garini; Yaron Shav-Tal
Journal:  Nat Protoc       Date:  2013-02       Impact factor: 13.491

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