Literature DB >> 23980011

The dynamics of DNA damage repair and transcription.

Niraj M Shanbhag1, Roger A Greenberg.   

Abstract

Recent advances have led to several systems to study transcription from defined loci in living cells. It has now become possible to address long-standing questions regarding the interplay between the processes of DNA damage repair and transcription-two disparate processes that can occur on the same stretch of chromatin and which both lead to extensive chromatin change. Here we describe the development of a system to create enzymatically induced DNA double-strand breaks (DSBs) at a site of inducible transcription and methods to study the interplay between these processes.

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Year:  2013        PMID: 23980011      PMCID: PMC3827964          DOI: 10.1007/978-1-62703-526-2_16

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  21 in total

1.  Show and tell: visualizing gene expression in living cells.

Authors:  Ilona U Rafalska-Metcalf; Susan M Janicki
Journal:  J Cell Sci       Date:  2007-07-15       Impact factor: 5.285

2.  Imaging mRNAs in living mammalian cells.

Authors:  Sharon Yunger; Yaron Shav-Tal
Journal:  Methods Mol Biol       Date:  2011

3.  DNAPKcs-dependent arrest of RNA polymerase II transcription in the presence of DNA breaks.

Authors:  Tibor Pankotai; Céline Bonhomme; David Chen; Evi Soutoglou
Journal:  Nat Struct Mol Biol       Date:  2012-02-12       Impact factor: 15.369

4.  ATM-dependent chromatin changes silence transcription in cis to DNA double-strand breaks.

Authors:  Niraj M Shanbhag; Ilona U Rafalska-Metcalf; Carlo Balane-Bolivar; Susan M Janicki; Roger A Greenberg
Journal:  Cell       Date:  2010-06-11       Impact factor: 41.582

5.  Distinct spatiotemporal dynamics of mammalian checkpoint regulators induced by DNA damage.

Authors:  Claudia Lukas; Jacob Falck; Jirina Bartkova; Jiri Bartek; Jiri Lukas
Journal:  Nat Cell Biol       Date:  2003-03       Impact factor: 28.824

6.  Damage-induced ubiquitylation of human RNA polymerase II by the ubiquitin ligase Nedd4, but not Cockayne syndrome proteins or BRCA1.

Authors:  Roy Anindya; Ozan Aygün; Jesper Q Svejstrup
Journal:  Mol Cell       Date:  2007-11-09       Impact factor: 17.970

7.  Deletion, rearrangement, and gene conversion; genetic consequences of chromosomal double-strand breaks in human cells.

Authors:  Masamitsu Honma; Masako Izumi; Mayumi Sakuraba; Satoshi Tadokoro; Hiroko Sakamoto; Wensheng Wang; Fumio Yatagai; Makoto Hayashi
Journal:  Environ Mol Mutagen       Date:  2003       Impact factor: 3.216

8.  Colocalization of multiple DNA double-strand breaks at a single Rad52 repair centre.

Authors:  Michael Lisby; Uffe H Mortensen; Rodney Rothstein
Journal:  Nat Cell Biol       Date:  2003-06       Impact factor: 28.824

9.  The ATM repair pathway inhibits RNA polymerase I transcription in response to chromosome breaks.

Authors:  Michael Kruhlak; Elizabeth E Crouch; Marika Orlov; Carolina Montaño; Stanislaw A Gorski; André Nussenzweig; Tom Misteli; Robert D Phair; Rafael Casellas
Journal:  Nature       Date:  2007-06-07       Impact factor: 49.962

10.  High-resolution profiling of gammaH2AX around DNA double strand breaks in the mammalian genome.

Authors:  Jason S Iacovoni; Pierre Caron; Imen Lassadi; Estelle Nicolas; Laurent Massip; Didier Trouche; Gaëlle Legube
Journal:  EMBO J       Date:  2010-04-01       Impact factor: 14.012

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  6 in total

Review 1.  Chromatin modifications during repair of environmental exposure-induced DNA damage: a potential mechanism for stable epigenetic alterations.

Authors:  Heather M O'Hagan
Journal:  Environ Mol Mutagen       Date:  2013-11-20       Impact factor: 3.216

2.  POGZ promotes homology-directed DNA repair in an HP1-dependent manner.

Authors:  John Heath; Estelle Simo Cheyou; Steven Findlay; Vincent M Luo; Edgar Pinedo Carpio; Jeesan Lee; Billel Djerir; Xiaoru Chen; Théo Morin; Benjamin Lebeau; Martin Karam; Halil Bagci; Damien Grapton; Josie Ursini-Siegel; Jean-Francois Côté; Michael Witcher; Stéphane Richard; Alexandre Maréchal; Alexandre Orthwein
Journal:  EMBO Rep       Date:  2021-11-10       Impact factor: 9.071

3.  SIRT2 promotes BRCA1-BARD1 heterodimerization through deacetylation.

Authors:  Elizabeth V Minten; Priya Kapoor-Vazirani; Chunyang Li; Hui Zhang; Kamakshi Balakrishnan; David S Yu
Journal:  Cell Rep       Date:  2021-03-30       Impact factor: 9.423

Review 4.  The role of the dysfunctional akt-related pathway in cancer: establishment and maintenance of a malignant cell phenotype, resistance to therapy, and future strategies for drug development.

Authors:  Gaetano Romano
Journal:  Scientifica (Cairo)       Date:  2013-12-05

5.  Reciprocal regulation of RIG-I and XRCC4 connects DNA repair with RIG-I immune signaling.

Authors:  Guijie Guo; Ming Gao; Xiaochen Gao; Bibo Zhu; Jinzhou Huang; Xinyi Tu; Wootae Kim; Fei Zhao; Qin Zhou; Shouhai Zhu; Zheming Wu; Yuanliang Yan; Yong Zhang; Xiangyu Zeng; Qian Zhu; Ping Yin; Kuntian Luo; Jie Sun; Min Deng; Zhenkun Lou
Journal:  Nat Commun       Date:  2021-04-12       Impact factor: 14.919

Review 6.  Studying DNA Double-Strand Break Repair: An Ever-Growing Toolbox.

Authors:  Alexandra C Vítor; Pablo Huertas; Gaëlle Legube; Sérgio F de Almeida
Journal:  Front Mol Biosci       Date:  2020-02-21
  6 in total

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