Literature DB >> 20730797

Live cell imaging and systems biology.

Myong-Hee Sung1, James G McNally.   

Abstract

Much of the experimental data used to construct mathematical models of molecular networks are derived from in vitro measurements. However, there is increasing evidence that in vitro measurements fail to capture both the complexity and the individuality found in single, living cells. These limitations can be overcome by live cell microscopy which is evolving to enable in vivo biochemistry. Here, we survey the current capabilities of live cell microscopy and illustrate how a number of different imaging approaches could be applied to analyze a specific molecular network. We argue that incorporation of such quantitative live-cell imaging methods is critical for the progress of systems biology.
Copyright © 2010 John Wiley & Sons, Inc.

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Year:  2010        PMID: 20730797      PMCID: PMC2992103          DOI: 10.1002/wsbm.108

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev Syst Biol Med        ISSN: 1939-005X


  82 in total

Review 1.  Building and breeding molecules to spy on cells and tumors.

Authors:  Roger Y Tsien
Journal:  FEBS Lett       Date:  2005-02-07       Impact factor: 4.124

2.  Dynamic proteomics in individual human cells uncovers widespread cell-cycle dependence of nuclear proteins.

Authors:  Alex Sigal; Ron Milo; Ariel Cohen; Naama Geva-Zatorsky; Yael Klein; Inbal Alaluf; Naamah Swerdlin; Natalie Perzov; Tamar Danon; Yuvalal Liron; Tal Raveh; Anne E Carpenter; Galit Lahav; Uri Alon
Journal:  Nat Methods       Date:  2006-07       Impact factor: 28.547

Review 3.  Analyzing protein kinase dynamics in living cells with FRET reporters.

Authors:  Qiang Ni; Denis V Titov; Jin Zhang
Journal:  Methods       Date:  2006-11       Impact factor: 3.608

4.  Molecular linkage between the kinase ATM and NF-kappaB signaling in response to genotoxic stimuli.

Authors:  Zhao-Hui Wu; Yuling Shi; Randal S Tibbetts; Shigeki Miyamoto
Journal:  Science       Date:  2006-02-24       Impact factor: 47.728

Review 5.  Visualization of DNA methylation and histone modifications in living cells.

Authors:  Hiroshi Kimura; Yoko Hayashi-Takanaka; Kazuo Yamagata
Journal:  Curr Opin Cell Biol       Date:  2010-03-06       Impact factor: 8.382

6.  Indicators based on fluorescence resonance energy transfer (FRET).

Authors:  Roger Y Tsien
Journal:  Cold Spring Harb Protoc       Date:  2009-07

7.  Characterization of the nuclear import and export functions of Ikappa B(epsilon).

Authors:  Sang-Hyun Lee; Mark Hannink
Journal:  J Biol Chem       Date:  2002-04-22       Impact factor: 5.157

Review 8.  Fluorescence resonance energy transfer (FRET) microscopy imaging of live cell protein localizations.

Authors:  Rajesh Babu Sekar; Ammasi Periasamy
Journal:  J Cell Biol       Date:  2003-03-03       Impact factor: 10.539

9.  Computational cell biology.

Authors:  Ira Mellman; Tom Misteli
Journal:  J Cell Biol       Date:  2003-05-12       Impact factor: 10.539

10.  Sustained oscillations of NF-kappaB produce distinct genome scanning and gene expression profiles.

Authors:  Myong-Hee Sung; Luigi Salvatore; Rossana De Lorenzi; Anindya Indrawan; Manolis Pasparakis; Gordon L Hager; Marco E Bianchi; Alessandra Agresti
Journal:  PLoS One       Date:  2009-09-29       Impact factor: 3.240

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  17 in total

1.  Genome-wide footprinting: ready for prime time?

Authors:  Myong-Hee Sung; Songjoon Baek; Gordon L Hager
Journal:  Nat Methods       Date:  2016-03       Impact factor: 28.547

2.  Live-cell imaging.

Authors:  Richard Cole
Journal:  Cell Adh Migr       Date:  2014-10-31       Impact factor: 3.405

3.  Interrogation of inhibitor of nuclear factor κB α/nuclear factor κB (IκBα/NF-κB) negative feedback loop dynamics: from single cells to live animals in vivo.

Authors:  Britney L Moss; Adnan Elhammali; Tiffanie Fowlkes; Shimon Gross; Anant Vinjamoori; Christopher H Contag; David Piwnica-Worms
Journal:  J Biol Chem       Date:  2012-07-17       Impact factor: 5.157

Review 4.  Eukaryotic transcriptional dynamics: from single molecules to cell populations.

Authors:  Antoine Coulon; Carson C Chow; Robert H Singer; Daniel R Larson
Journal:  Nat Rev Genet       Date:  2013-07-09       Impact factor: 53.242

5.  Imaging protein complex formation in the autophagy pathway: analysis of the interaction of LC3 and Atg4B(C74A) in live cells using Förster resonance energy transfer and fluorescence recovery after photobleaching.

Authors:  Lewis J Kraft; Anne K Kenworthy
Journal:  J Biomed Opt       Date:  2012-01       Impact factor: 3.170

Review 6.  Functioning nanomachines seen in real-time in living bacteria using single-molecule and super-resolution fluorescence imaging.

Authors:  Sheng-Wen Chiu; Mark C Leake
Journal:  Int J Mol Sci       Date:  2011-04-15       Impact factor: 5.923

7.  ATP and spontaneous calcium oscillations control neural stem cell fate determination in Huntington's disease: a novel approach for cell clock research.

Authors:  Talita Glaser; Hiromi Shimojo; Deidiane Elisa Ribeiro; Patrícia Pereira Lopes Martins; Renata Pereira Beco; Michal Kosinski; Vanessa Fernandes Arnaud Sampaio; Juliana Corrêa-Velloso; Ágatha Oliveira-Giacomelli; Claudiana Lameu; Ana Paula de Jesus Santos; Héllio Danny Nóbrega de Souza; Yang D Teng; Ryoichiro Kageyama; Henning Ulrich
Journal:  Mol Psychiatry       Date:  2020-04-29       Impact factor: 13.437

8.  Synthetic Fluorophores for Visualizing Biomolecules in Living Systems.

Authors:  V I Martynov; A A Pakhomov; N V Popova; I E Deyev; A G Petrenko
Journal:  Acta Naturae       Date:  2016 Oct-Dec       Impact factor: 1.845

9.  Light microscopy applications in systems biology: opportunities and challenges.

Authors:  Paul Michel Aloyse Antony; Christophe Trefois; Aleksandar Stojanovic; Aidos Sagatovich Baumuratov; Karol Kozak
Journal:  Cell Commun Signal       Date:  2013-04-11       Impact factor: 5.712

10.  A checklist for successful quantitative live cell imaging in systems biology.

Authors:  Myong-Hee Sung
Journal:  Cells       Date:  2013-04-29       Impact factor: 6.600

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