Literature DB >> 17581636

Crystal structure and mutational study of RecOR provide insight into its mode of DNA binding.

Joanna Timmins1, Ingar Leiros, Sean McSweeney.   

Abstract

The crystal structure of the complex formed between Deinococcus radiodurans RecR and RecO (drRecOR) has been determined. In accordance with previous biochemical characterisation, the drRecOR complex displays a RecR:RecO molecular ratio of 2:1. The biologically relevant drRecOR entity consists of a heterohexamer in the form of two drRecO molecules positioned on either side of the tetrameric ring of drRecR, with their OB (oligonucleotide/oligosaccharide-binding) domains pointing towards the interior of the ring. Mutagenesis studies validated the protein-protein interactions observed in the crystal structure and allowed mapping of the residues in the drRecOR complex required for DNA binding. Furthermore, the preferred DNA substrate of drRecOR was identified as being 3'-overhanging DNA, as encountered at ssDNA-dsDNA junctions. Together these results suggest a possible mechanism for drRecOR recognition of stalled replication forks.

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Year:  2007        PMID: 17581636      PMCID: PMC1914108          DOI: 10.1038/sj.emboj.7601760

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  38 in total

1.  Dissecting protein-protein recognition sites.

Authors:  Pinak Chakrabarti; Joël Janin
Journal:  Proteins       Date:  2002-05-15

2.  RecFOR function is required for DNA repair and recombination in a RecA loading-deficient recB mutant of Escherichia coli.

Authors:  Ivana Ivancić-Baće; Petra Peharec; Suncana Moslavac; Nikolina Skrobot; Erika Salaj-Smic; Krunoslav Brcić-Kostić
Journal:  Genetics       Date:  2003-02       Impact factor: 4.562

3.  RecFOR proteins load RecA protein onto gapped DNA to accelerate DNA strand exchange: a universal step of recombinational repair.

Authors:  Katsumi Morimatsu; Stephen C Kowalczykowski
Journal:  Mol Cell       Date:  2003-05       Impact factor: 17.970

4.  A novel structure of DNA repair protein RecO from Deinococcus radiodurans.

Authors:  Nodar Makharashvili; Olga Koroleva; Sibes Bera; Duane P Grandgenett; Sergey Korolev
Journal:  Structure       Date:  2004-10       Impact factor: 5.006

5.  Crystal structure of RecBCD enzyme reveals a machine for processing DNA breaks.

Authors:  Martin R Singleton; Mark S Dillingham; Martin Gaudier; Stephen C Kowalczykowski; Dale B Wigley
Journal:  Nature       Date:  2004-11-11       Impact factor: 49.962

6.  Crystal structure and DNA-binding analysis of RecO from Deinococcus radiodurans.

Authors:  Ingar Leiros; Joanna Timmins; David R Hall; Sean McSweeney
Journal:  EMBO J       Date:  2005-02-17       Impact factor: 11.598

7.  Interactions of RecF protein with RecO, RecR, and single-stranded DNA binding proteins reveal roles for the RecF-RecO-RecR complex in DNA repair and recombination.

Authors:  S P Hegde; M H Qin; X H Li; M A Atkinson; A J Clark; M Rajagopalan; M V Madiraju
Journal:  Proc Natl Acad Sci U S A       Date:  1996-12-10       Impact factor: 11.205

8.  The RecOR proteins modulate RecA protein function at 5' ends of single-stranded DNA.

Authors:  J M Bork; M M Cox; R B Inman
Journal:  EMBO J       Date:  2001-12-17       Impact factor: 11.598

9.  Protein interactions in genetic recombination in Escherichia coli. Interactions involving RecO and RecR overcome the inhibition of RecA by single-stranded DNA-binding protein.

Authors:  K Umezu; R D Kolodner
Journal:  J Biol Chem       Date:  1994-11-25       Impact factor: 5.157

10.  Novel DNA binding motifs in the DNA repair enzyme endonuclease III crystal structure.

Authors:  M M Thayer; H Ahern; D Xing; R P Cunningham; J A Tainer
Journal:  EMBO J       Date:  1995-08-15       Impact factor: 11.598

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  26 in total

1.  A mechanism for single-stranded DNA-binding protein (SSB) displacement from single-stranded DNA upon SSB-RecO interaction.

Authors:  Jin Inoue; Takayuki Nagae; Masaki Mishima; Yutaka Ito; Takehiko Shibata; Tsutomu Mikawa
Journal:  J Biol Chem       Date:  2010-12-17       Impact factor: 5.157

2.  Allosteric effects of SSB C-terminal tail on assembly of E. coli RecOR proteins.

Authors:  Min Kyung Shinn; Alexander G Kozlov; Timothy M Lohman
Journal:  Nucleic Acids Res       Date:  2021-02-26       Impact factor: 16.971

3.  RecO is essential for DNA damage repair in Deinococcus radiodurans.

Authors:  Guangzhi Xu; Liangyan Wang; Huan Chen; Huiming Lu; Nanjiao Ying; Bing Tian; Yuejin Hua
Journal:  J Bacteriol       Date:  2008-01-25       Impact factor: 3.490

4.  D-loop formation by Brh2 protein of Ustilago maydis.

Authors:  Nayef Mazloum; Qingwen Zhou; William K Holloman
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-03       Impact factor: 11.205

Review 5.  SSB as an organizer/mobilizer of genome maintenance complexes.

Authors:  Robert D Shereda; Alexander G Kozlov; Timothy M Lohman; Michael M Cox; James L Keck
Journal:  Crit Rev Biochem Mol Biol       Date:  2008 Sep-Oct       Impact factor: 8.250

6.  RecR-mediated modulation of RecF dimer specificity for single- and double-stranded DNA.

Authors:  Nodar Makharashvili; Tian Mi; Olga Koroleva; Sergey Korolev
Journal:  J Biol Chem       Date:  2008-11-17       Impact factor: 5.157

7.  Structure-function analysis of pneumococcal DprA protein reveals that dimerization is crucial for loading RecA recombinase onto DNA during transformation.

Authors:  Sophie Quevillon-Cheruel; Nathalie Campo; Nicolas Mirouze; Isabelle Mortier-Barrière; Mark A Brooks; Marion Boudes; Dominique Durand; Anne-Lise Soulet; Johnny Lisboa; Philippe Noirot; Bernard Martin; Herman van Tilbeurgh; Marie-Françoise Noirot-Gros; Jean-Pierre Claverys; Patrice Polard
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-17       Impact factor: 11.205

8.  Application of normal-mode refinement to X-ray crystal structures at the lower resolution limit.

Authors:  Fengyun Ni; Billy K Poon; Qinghua Wang; Jianpeng Ma
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-06-20

9.  RecO protein initiates DNA recombination and strand annealing through two alternative DNA binding mechanisms.

Authors:  Mikhail Ryzhikov; Richa Gupta; Michael Glickman; Sergey Korolev
Journal:  J Biol Chem       Date:  2014-08-28       Impact factor: 5.157

10.  Rising from the Ashes: DNA Repair in Deinococcus radiodurans.

Authors:  Michael M Cox; James L Keck; John R Battista
Journal:  PLoS Genet       Date:  2010-01-15       Impact factor: 5.917

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