Literature DB >> 22904190

Structure-function analysis of pneumococcal DprA protein reveals that dimerization is crucial for loading RecA recombinase onto DNA during transformation.

Sophie Quevillon-Cheruel1, Nathalie Campo, Nicolas Mirouze, Isabelle Mortier-Barrière, Mark A Brooks, Marion Boudes, Dominique Durand, Anne-Lise Soulet, Johnny Lisboa, Philippe Noirot, Bernard Martin, Herman van Tilbeurgh, Marie-Françoise Noirot-Gros, Jean-Pierre Claverys, Patrice Polard.   

Abstract

Transformation promotes genome plasticity in bacteria via RecA-driven homologous recombination. In the gram-positive human pathogen Streptococcus pneumoniae, the transformasome a multiprotein complex, internalizes, protects, and processes transforming DNA to generate chromosomal recombinants. Double-stranded DNA is internalized as single strands, onto which the transformation-dedicated DNA processing protein A (DprA) ensures the loading of RecA to form presynaptic filaments. We report that the structure of DprA consists of the association of a sterile alpha motif domain and a Rossmann fold and that DprA forms tail-to-tail dimers. The isolation of DprA self-interaction mutants revealed that dimerization is crucial for the formation of nucleocomplexes in vitro and for genetic transformation. Residues important for DprA-RecA interaction also were identified and mutated, establishing this interaction as equally important for transformation. Positioning of key interaction residues on the DprA structure revealed an overlap of DprA-DprA and DprA-RecA interaction surfaces. We propose a model in which RecA interaction promotes rearrangement or disruption of the DprA dimer, enabling the subsequent nucleation of RecA and its polymerization onto ssDNA.

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Year:  2012        PMID: 22904190      PMCID: PMC3443122          DOI: 10.1073/pnas.1205638109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

1.  The Significance of Pneumococcal Types.

Authors:  F Griffith
Journal:  J Hyg (Lond)       Date:  1928-01

2.  Crystal structure of RecBCD enzyme reveals a machine for processing DNA breaks.

Authors:  Martin R Singleton; Mark S Dillingham; Martin Gaudier; Stephen C Kowalczykowski; Dale B Wigley
Journal:  Nature       Date:  2004-11-11       Impact factor: 49.962

Review 3.  Motoring along with the bacterial RecA protein.

Authors:  Michael M Cox
Journal:  Nat Rev Mol Cell Biol       Date:  2007-01-17       Impact factor: 94.444

4.  An unmodified heptadecapeptide pheromone induces competence for genetic transformation in Streptococcus pneumoniae.

Authors:  L S Håvarstein; G Coomaraswamy; D A Morrison
Journal:  Proc Natl Acad Sci U S A       Date:  1995-11-21       Impact factor: 11.205

5.  Structure of the DLM-1-Z-DNA complex reveals a conserved family of Z-DNA-binding proteins.

Authors:  T Schwartz; J Behlke; K Lowenhaupt; U Heinemann; A Rich
Journal:  Nat Struct Biol       Date:  2001-09

6.  Cross-regulation of competence pheromone production and export in the early control of transformation in Streptococcus pneumoniae.

Authors:  B Martin; M Prudhomme; G Alloing; C Granadel; J P Claverys
Journal:  Mol Microbiol       Date:  2000-11       Impact factor: 3.501

7.  Sequential Peptide Affinity (SPA) system for the identification of mammalian and bacterial protein complexes.

Authors:  Mahel Zeghouf; Joyce Li; Gareth Butland; Anna Borkowska; Veronica Canadien; Dawn Richards; Bryan Beattie; Andrew Emili; Jack F Greenblatt
Journal:  J Proteome Res       Date:  2004 May-Jun       Impact factor: 4.466

8.  BRCA2 function in DNA binding and recombination from a BRCA2-DSS1-ssDNA structure.

Authors:  Haijuan Yang; Philip D Jeffrey; Julie Miller; Elspeth Kinnucan; Yutong Sun; Nicolas H Thoma; Ning Zheng; Phang-Lang Chen; Wen-Hwa Lee; Nikola P Pavletich
Journal:  Science       Date:  2002-09-13       Impact factor: 47.728

9.  The RecA binding locus of RecBCD is a general domain for recruitment of DNA strand exchange proteins.

Authors:  Maria Spies; Stephen C Kowalczykowski
Journal:  Mol Cell       Date:  2006-02-17       Impact factor: 17.970

10.  TM-align: a protein structure alignment algorithm based on the TM-score.

Authors:  Yang Zhang; Jeffrey Skolnick
Journal:  Nucleic Acids Res       Date:  2005-04-22       Impact factor: 16.971

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  25 in total

Review 1.  Bacterial transformation: distribution, shared mechanisms and divergent control.

Authors:  Calum Johnston; Bernard Martin; Gwennaele Fichant; Patrice Polard; Jean-Pierre Claverys
Journal:  Nat Rev Microbiol       Date:  2014-02-10       Impact factor: 60.633

Review 2.  Natural competence and the evolution of DNA uptake specificity.

Authors:  Joshua Chang Mell; Rosemary J Redfield
Journal:  J Bacteriol       Date:  2014-01-31       Impact factor: 3.490

3.  Roles of Bacillus subtilis DprA and SsbA in RecA-mediated genetic recombination.

Authors:  Tribhuwan Yadav; Begoña Carrasco; Ester Serrano; Juan C Alonso
Journal:  J Biol Chem       Date:  2014-08-19       Impact factor: 5.157

4.  Direct involvement of DprA, the transformation-dedicated RecA loader, in the shut-off of pneumococcal competence.

Authors:  Nicolas Mirouze; Mathieu A Bergé; Anne-Lise Soulet; Isabelle Mortier-Barrière; Yves Quentin; Gwennaele Fichant; Chantal Granadel; Marie-Françoise Noirot-Gros; Philippe Noirot; Patrice Polard; Bernard Martin; Jean-Pierre Claverys
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-25       Impact factor: 11.205

5.  Uptake of extracellular DNA: competence induced pili in natural transformation of Streptococcus pneumoniae.

Authors:  Sandra Muschiol; Murat Balaban; Staffan Normark; Birgitta Henriques-Normark
Journal:  Bioessays       Date:  2015-01-15       Impact factor: 4.345

6.  Insights into the Functional Roles of N-Terminal and C-Terminal Domains of Helicobacter pylori DprA.

Authors:  Gajendradhar R Dwivedi; Kolluru D Srikanth; Praveen Anand; Javed Naikoo; N S Srilatha; Desirazu N Rao
Journal:  PLoS One       Date:  2015-07-02       Impact factor: 3.240

7.  Structural insights into the dimerization of the response regulator ComE from Streptococcus pneumoniae.

Authors:  Marion Boudes; Dyana Sanchez; Marc Graille; Herman van Tilbeurgh; Dominique Durand; Sophie Quevillon-Cheruel
Journal:  Nucleic Acids Res       Date:  2014-02-05       Impact factor: 16.971

8.  Natural genetic transformation generates a population of merodiploids in Streptococcus pneumoniae.

Authors:  Calum Johnston; Stéphanie Caymaris; Aldert Zomer; Hester J Bootsma; Marc Prudhomme; Chantal Granadel; Peter W M Hermans; Patrice Polard; Bernard Martin; Jean-Pierre Claverys
Journal:  PLoS Genet       Date:  2013-09-26       Impact factor: 5.917

9.  Helicobacter pylori DprA alleviates restriction barrier for incoming DNA.

Authors:  Gajendradhar R Dwivedi; Eshita Sharma; Desirazu N Rao
Journal:  Nucleic Acids Res       Date:  2013-01-25       Impact factor: 16.971

10.  Structural insights into the unique single-stranded DNA-binding mode of Helicobacter pylori DprA.

Authors:  Wei Wang; Jingjin Ding; Ying Zhang; Yonglin Hu; Da-Cheng Wang
Journal:  Nucleic Acids Res       Date:  2013-12-24       Impact factor: 16.971

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