Literature DB >> 18937104

SSB as an organizer/mobilizer of genome maintenance complexes.

Robert D Shereda1, Alexander G Kozlov, Timothy M Lohman, Michael M Cox, James L Keck.   

Abstract

When duplex DNA is altered in almost any way (replicated, recombined, or repaired), single strands of DNA are usually intermediates, and single-stranded DNA binding (SSB) proteins are present. These proteins have often been described as inert, protective DNA coatings. Continuing research is demonstrating a far more complex role of SSB that includes the organization and/or mobilization of all aspects of DNA metabolism. Escherichia coli SSB is now known to interact with at least 14 other proteins that include key components of the elaborate systems involved in every aspect of DNA metabolism. Most, if not all, of these interactions are mediated by the amphipathic C-terminus of SSB. In this review, we summarize the extent of the eubacterial SSB interaction network, describe the energetics of interactions with SSB, and highlight the roles of SSB in the process of recombination. Similar themes to those highlighted in this review are evident in all biological systems.

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Year:  2008        PMID: 18937104      PMCID: PMC2583361          DOI: 10.1080/10409230802341296

Source DB:  PubMed          Journal:  Crit Rev Biochem Mol Biol        ISSN: 1040-9238            Impact factor:   8.250


  423 in total

1.  DnaB helicase affects the initiation specificity of Escherichia coli primase on single-stranded DNA templates.

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Journal:  Biochemistry       Date:  2000-02-01       Impact factor: 3.162

2.  Identification and purification of a single-stranded-DNA-specific exonuclease encoded by the recJ gene of Escherichia coli.

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Journal:  Proc Natl Acad Sci U S A       Date:  1989-04       Impact factor: 11.205

3.  Direct observation of individual RecA filaments assembling on single DNA molecules.

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Journal:  Nature       Date:  2006-09-20       Impact factor: 49.962

4.  Resolution of converging replication forks by RecQ and topoisomerase III.

Authors:  Catherine Suski; Kenneth J Marians
Journal:  Mol Cell       Date:  2008-06-20       Impact factor: 17.970

5.  Domains of Escherichia coli primase: functional activity of a 47-kDa N-terminal proteolytic fragment.

Authors:  W Sun; J Tormo; T A Steitz; G N Godson
Journal:  Proc Natl Acad Sci U S A       Date:  1994-11-22       Impact factor: 11.205

6.  Trading places on DNA--a three-point switch underlies primer handoff from primase to the replicative DNA polymerase.

Authors:  A Yuzhakov; Z Kelman; M O'Donnell
Journal:  Cell       Date:  1999-01-08       Impact factor: 41.582

Review 7.  Replication protein A: a heterotrimeric, single-stranded DNA-binding protein required for eukaryotic DNA metabolism.

Authors:  M S Wold
Journal:  Annu Rev Biochem       Date:  1997       Impact factor: 23.643

8.  Purification and characterization of the coliphage N4-coded single-stranded DNA binding protein.

Authors:  G Lindberg; S C Kowalczykowski; J K Rist; A Sugino; L B Rothman-Denes
Journal:  J Biol Chem       Date:  1989-07-25       Impact factor: 5.157

9.  PriA is essential for viability of the Escherichia coli topoisomerase IV parE10(Ts) mutant.

Authors:  Gianfranco Grompone; Vladimir Bidnenko; S Dusko Ehrlich; Bénédicte Michel
Journal:  J Bacteriol       Date:  2004-02       Impact factor: 3.490

10.  Role of SSB protein in RecA promoted branch migration reactions.

Authors:  S C West; E Cassuto; P Howard-Flanders
Journal:  Mol Gen Genet       Date:  1982
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  252 in total

1.  E. coli SSB tetramer binds the first and second molecules of (dT)(35) with heat capacities of opposite sign.

Authors:  Alexander G Kozlov; Timothy M Lohman
Journal:  Biophys Chem       Date:  2011-05-12       Impact factor: 2.352

Review 2.  Single-molecule views of protein movement on single-stranded DNA.

Authors:  Taekjip Ha; Alexander G Kozlov; Timothy M Lohman
Journal:  Annu Rev Biophys       Date:  2012-02-23       Impact factor: 12.981

3.  RecG protein and single-strand DNA exonucleases avoid cell lethality associated with PriA helicase activity in Escherichia coli.

Authors:  Christian J Rudolph; Akeel A Mahdi; Amy L Upton; Robert G Lloyd
Journal:  Genetics       Date:  2010-07-20       Impact factor: 4.562

4.  Structure of a DNA polymerase alpha-primase domain that docks on the SV40 helicase and activates the viral primosome.

Authors:  Hao Huang; Brian E Weiner; Haijiang Zhang; Brian E Fuller; Yue Gao; Brian M Wile; Kun Zhao; Diana R Arnett; Walter J Chazin; Ellen Fanning
Journal:  J Biol Chem       Date:  2010-03-16       Impact factor: 5.157

Review 5.  Essential biological processes of an emerging pathogen: DNA replication, transcription, and cell division in Acinetobacter spp.

Authors:  Andrew Robinson; Anthony J Brzoska; Kylie M Turner; Ryan Withers; Elizabeth J Harry; Peter J Lewis; Nicholas E Dixon
Journal:  Microbiol Mol Biol Rev       Date:  2010-06       Impact factor: 11.056

6.  Crystal structures of DNA-Whirly complexes and their role in Arabidopsis organelle genome repair.

Authors:  Laurent Cappadocia; Alexandre Maréchal; Jean-Sébastien Parent; Etienne Lepage; Jurgen Sygusch; Normand Brisson
Journal:  Plant Cell       Date:  2010-06-15       Impact factor: 11.277

7.  Specificity of binding of single-stranded DNA-binding protein to its target.

Authors:  Luda S Shlyakhtenko; Alexander Y Lushnikov; Atsushi Miyagi; Yuri L Lyubchenko
Journal:  Biochemistry       Date:  2012-02-06       Impact factor: 3.162

8.  Replicative DNA polymerases promote active displacement of SSB proteins during lagging strand synthesis.

Authors:  Fernando Cerrón; Sara de Lorenzo; Kateryna M Lemishko; Grzegorz L Ciesielski; Laurie S Kaguni; Francisco J Cao; Borja Ibarra
Journal:  Nucleic Acids Res       Date:  2019-06-20       Impact factor: 16.971

9.  Allosteric effects of SSB C-terminal tail on assembly of E. coli RecOR proteins.

Authors:  Min Kyung Shinn; Alexander G Kozlov; Timothy M Lohman
Journal:  Nucleic Acids Res       Date:  2021-02-26       Impact factor: 16.971

10.  Stimulation of Escherichia coli DNA damage inducible DNA helicase DinG by the single-stranded DNA binding protein SSB.

Authors:  Zishuo Cheng; Aimee Caillet; Binbin Ren; Huangen Ding
Journal:  FEBS Lett       Date:  2012-10-01       Impact factor: 4.124

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