Literature DB >> 15719017

Crystal structure and DNA-binding analysis of RecO from Deinococcus radiodurans.

Ingar Leiros1, Joanna Timmins, David R Hall, Sean McSweeney.   

Abstract

The RecFOR pathway has been shown to be essential for DNA repair through the process of homologous recombination in bacteria and, recently, to be important in the recovery of stalled replication forks following UV irradiation. RecO, along with RecR, RecF, RecQ and RecJ, is a principal actor in this fundamental DNA repair pathway. Here we present the three-dimensional structure of a member of the RecO family. The crystal structure of Deinococcus radiodurans RecO (drRecO) reveals possible binding sites for DNA and for the RecO-binding proteins within its three discrete structural regions: an N-terminal oligonucleotide/oligosaccharide-binding domain, a helical bundle and a zinc-finger motif. Furthermore, drRecO was found to form a stable complex with RecR and to bind both single- and double-stranded DNA. Mutational analysis confirmed the existence of multiple DNA-binding sites within the protein.

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Year:  2005        PMID: 15719017      PMCID: PMC554131          DOI: 10.1038/sj.emboj.7600582

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  32 in total

1.  Automated structure solution, density modification and model building.

Authors:  Thomas C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-10-21

2.  Structure of the Sec23/24-Sar1 pre-budding complex of the COPII vesicle coat.

Authors:  Xiping Bi; Richard A Corpina; Jonathan Goldberg
Journal:  Nature       Date:  2002-09-19       Impact factor: 49.962

3.  Structure of the single-stranded-DNA-binding domain of replication protein A bound to DNA.

Authors:  A Bochkarev; R A Pfuetzner; A M Edwards; L Frappier
Journal:  Nature       Date:  1997-01-09       Impact factor: 49.962

4.  Interactions of RecF protein with RecO, RecR, and single-stranded DNA binding proteins reveal roles for the RecF-RecO-RecR complex in DNA repair and recombination.

Authors:  S P Hegde; M H Qin; X H Li; M A Atkinson; A J Clark; M Rajagopalan; M V Madiraju
Journal:  Proc Natl Acad Sci U S A       Date:  1996-12-10       Impact factor: 11.205

5.  Synthesis of aspartyl-tRNA(Asp) in Escherichia coli--a snapshot of the second step.

Authors:  S Eiler; A Dock-Bregeon; L Moulinier; J C Thierry; D Moras
Journal:  EMBO J       Date:  1999-11-15       Impact factor: 11.598

6.  Crystallization of a member of the recFOR DNA repair pathway, RecO, with and without bound oligonucleotide.

Authors:  Shelly Aono; Thomas Hartsch; Ursula Schulze-Gahmen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-02-21

7.  High-resolution structure of the E.coli RecQ helicase catalytic core.

Authors:  Douglas A Bernstein; Morgan C Zittel; James L Keck
Journal:  EMBO J       Date:  2003-10-01       Impact factor: 11.598

8.  Protein interactions in genetic recombination in Escherichia coli. Interactions involving RecO and RecR overcome the inhibition of RecA by single-stranded DNA-binding protein.

Authors:  K Umezu; R D Kolodner
Journal:  J Biol Chem       Date:  1994-11-25       Impact factor: 5.157

9.  BRCA2 function in DNA binding and recombination from a BRCA2-DSS1-ssDNA structure.

Authors:  Haijuan Yang; Philip D Jeffrey; Julie Miller; Elspeth Kinnucan; Yutong Sun; Nicolas H Thoma; Ning Zheng; Phang-Lang Chen; Wen-Hwa Lee; Nikola P Pavletich
Journal:  Science       Date:  2002-09-13       Impact factor: 47.728

10.  Direct visualization of supercoiled DNA molecules in solution.

Authors:  M Adrian; B ten Heggeler-Bordier; W Wahli; A Z Stasiak; A Stasiak; J Dubochet
Journal:  EMBO J       Date:  1990-12       Impact factor: 11.598

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  33 in total

1.  A mechanism for single-stranded DNA-binding protein (SSB) displacement from single-stranded DNA upon SSB-RecO interaction.

Authors:  Jin Inoue; Takayuki Nagae; Masaki Mishima; Yutaka Ito; Takehiko Shibata; Tsutomu Mikawa
Journal:  J Biol Chem       Date:  2010-12-17       Impact factor: 5.157

2.  Allosteric effects of SSB C-terminal tail on assembly of E. coli RecOR proteins.

Authors:  Min Kyung Shinn; Alexander G Kozlov; Timothy M Lohman
Journal:  Nucleic Acids Res       Date:  2021-02-26       Impact factor: 16.971

3.  Structural conservation of RecF and Rad50: implications for DNA recognition and RecF function.

Authors:  Olga Koroleva; Nodar Makharashvili; Charmain T Courcelle; Justin Courcelle; Sergey Korolev
Journal:  EMBO J       Date:  2007-01-25       Impact factor: 11.598

4.  Crystal structure and mutational study of RecOR provide insight into its mode of DNA binding.

Authors:  Joanna Timmins; Ingar Leiros; Sean McSweeney
Journal:  EMBO J       Date:  2007-06-21       Impact factor: 11.598

5.  RecO is essential for DNA damage repair in Deinococcus radiodurans.

Authors:  Guangzhi Xu; Liangyan Wang; Huan Chen; Huiming Lu; Nanjiao Ying; Bing Tian; Yuejin Hua
Journal:  J Bacteriol       Date:  2008-01-25       Impact factor: 3.490

Review 6.  SSB as an organizer/mobilizer of genome maintenance complexes.

Authors:  Robert D Shereda; Alexander G Kozlov; Timothy M Lohman; Michael M Cox; James L Keck
Journal:  Crit Rev Biochem Mol Biol       Date:  2008 Sep-Oct       Impact factor: 8.250

7.  RecFOR and RecOR as distinct RecA loading pathways.

Authors:  Akiko Sakai; Michael M Cox
Journal:  J Biol Chem       Date:  2008-11-04       Impact factor: 5.157

8.  Bacillus subtilis RecO nucleates RecA onto SsbA-coated single-stranded DNA.

Authors:  Candela Manfredi; Begoña Carrasco; Silvia Ayora; Juan C Alonso
Journal:  J Biol Chem       Date:  2008-07-03       Impact factor: 5.157

9.  Structure of RecJ exonuclease defines its specificity for single-stranded DNA.

Authors:  Taisuke Wakamatsu; Yoshiaki Kitamura; Yutaro Kotera; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Journal:  J Biol Chem       Date:  2010-02-02       Impact factor: 5.157

10.  Rising from the Ashes: DNA Repair in Deinococcus radiodurans.

Authors:  Michael M Cox; James L Keck; John R Battista
Journal:  PLoS Genet       Date:  2010-01-15       Impact factor: 5.917

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