Literature DB >> 22354678

Emergent bistability: effects of additive and multiplicative noise.

S Ghosh1, S Banerjee, I Bose.   

Abstract

Positive feedback and cooperativity in the regulation of gene expression are generally considered to be necessary for obtaining bistable expression states. Recently, a novel mechanism of bistability termed emergent bistability has been proposed which involves only positive feedback and no cooperativity in the regulation. An additional positive feedback loop is effectively generated due to the inhibition of cellular growth by the synthesized proteins. The mechanism, demonstrated for a synthetic circuit, may be prevalent in natural systems also as some recent experimental results appear to suggest. In this paper, we study the effects of additive and multiplicative noise on the dynamics governing emergent bistability. The calculational scheme employed is based on the Langevin and Fokker-Planck formalisms. The steady state probability distributions of protein levels and the mean first passage times are computed for different noise strengths and system parameters. In the region of bistability, the bimodal probability distribution is shown to be a linear combination of a lognormal and a Gaussian distribution. The variances of the individual distributions and the relative weights of the distributions are further calculated for varying noise strengths and system parameters. The experimental relevance of the model results is also pointed out.

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Year:  2012        PMID: 22354678     DOI: 10.1140/epje/i2012-12011-4

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  36 in total

1.  Construction of a genetic toggle switch in Escherichia coli.

Authors:  T S Gardner; C R Cantor; J J Collins
Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

2.  Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations.

Authors:  T B Kepler; T C Elston
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

3.  Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion.

Authors:  A Becskei; B Séraphin; L Serrano
Journal:  EMBO J       Date:  2001-05-15       Impact factor: 11.598

Review 4.  Phenotypic variation in bacteria: the role of feedback regulation.

Authors:  Wiep Klaas Smits; Oscar P Kuipers; Jan-Willem Veening
Journal:  Nat Rev Microbiol       Date:  2006-04       Impact factor: 60.633

5.  Noise in gene expression determines cell fate in Bacillus subtilis.

Authors:  Hédia Maamar; Arjun Raj; David Dubnau
Journal:  Science       Date:  2007-06-14       Impact factor: 47.728

Review 6.  Bistability, epigenetics, and bet-hedging in bacteria.

Authors:  Jan-Willem Veening; Wiep Klaas Smits; Oscar P Kuipers
Journal:  Annu Rev Microbiol       Date:  2008       Impact factor: 15.500

7.  Noisy cell growth rate leads to fluctuating protein concentration in bacteria.

Authors:  Saburo Tsuru; Junya Ichinose; Akiko Kashiwagi; Bei-Wen Ying; Kunihiko Kaneko; Tetsuya Yomo
Journal:  Phys Biol       Date:  2009-06-30       Impact factor: 2.583

8.  Noise can induce bimodality in positive transcriptional feedback loops without bistability.

Authors:  Tsz-Leung To; Narendra Maheshri
Journal:  Science       Date:  2010-02-26       Impact factor: 47.728

Review 9.  Nature, nurture, or chance: stochastic gene expression and its consequences.

Authors:  Arjun Raj; Alexander van Oudenaarden
Journal:  Cell       Date:  2008-10-17       Impact factor: 41.582

10.  The role of RelMtb-mediated adaptation to stationary phase in long-term persistence of Mycobacterium tuberculosis in mice.

Authors:  John L Dahl; Carl N Kraus; Helena I M Boshoff; Bernard Doan; Korrie Foley; David Avarbock; Gilla Kaplan; Valerie Mizrahi; Harvey Rubin; Clifton E Barry
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-01       Impact factor: 11.205

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  4 in total

1.  Origins of binary gene expression in post-transcriptional regulation by microRNAs.

Authors:  I Bose; S Ghosh
Journal:  Eur Phys J E Soft Matter       Date:  2012-10-15       Impact factor: 1.890

2.  Threshold response and bistability in gene regulation by small noncoding RNA.

Authors:  Sutapa Mukherji
Journal:  Eur Phys J E Soft Matter       Date:  2018-01-31       Impact factor: 1.890

3.  Time-delay-induced dynamical behaviors for an ecological vegetation growth system driven by cross-correlated multiplicative and additive noises.

Authors:  Kang-Kang Wang; Hui Ye; Ya-Jun Wang; Sheng-Hong Li
Journal:  Eur Phys J E Soft Matter       Date:  2018-05-14       Impact factor: 1.890

4.  A stochastic chemical dynamic approach to correlate autoimmunity and optimal vitamin-D range.

Authors:  Susmita Roy; Krishna Shrinivas; Biman Bagchi
Journal:  PLoS One       Date:  2014-06-27       Impact factor: 3.240

  4 in total

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