Literature DB >> 17565176

Crystallization and preliminary X-ray analysis of 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase from Arthrobacter nitroguajacolicus Rü61a: a cofactor-devoid dioxygenase of the alpha/beta-hydrolase-fold superfamily.

Roberto A Steiner1, Ursula Frerichs-Deeken, Susanne Fetzner.   

Abstract

1H-3-Hydroxy-4-oxoquinaldine 2,4-dioxygenase (HOD) is a cofactor-devoid dioxygenase that is involved in the anthranilate pathway of quinaldine degradation. HOD has been proposed to belong to the alpha/beta-hydrolase-fold superfamily of enzymes. N-terminally His6-tagged HOD has been crystallized by the hanging-drop vapour-diffusion method using sodium/potassium tartrate as a precipitant and CuCl2 as an additive. The structure was solved by the single anomalous dispersion (SAD) technique using data collected to 3.5 A resolution at the Cu absorption peak wavelength. The crystals belong to the primitive tetragonal space group P4(3)2(1)2, with unit-cell parameters a = b = 153.788, c = 120.872 A.

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Year:  2007        PMID: 17565176      PMCID: PMC2335005          DOI: 10.1107/S174430910701353X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  13 in total

Review 1.  Alpha/beta hydrolase fold enzymes: the family keeps growing.

Authors:  M Nardini; B W Dijkstra
Journal:  Curr Opin Struct Biol       Date:  1999-12       Impact factor: 6.809

2.  Breaking good resolutions with ARP/wARP.

Authors:  Richard J Morris; Petrus H Zwart; Serge Cohen; Francisco J Fernandez; Mattheos Kakaris; Olga Kirillova; Clemens Vonrhein; Anastassis Perrakis; Victor S Lamzin
Journal:  J Synchrotron Radiat       Date:  2003-11-28       Impact factor: 2.616

3.  Generation, representation and flow of phase information in structure determination: recent developments in and around SHARP 2.0.

Authors:  G Bricogne; C Vonrhein; C Flensburg; M Schiltz; W Paciorek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-10-23

4.  Substructure solution with SHELXD.

Authors:  Thomas R Schneider; George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-28

5.  Anaerobic enzyme.substrate structures provide insight into the reaction mechanism of the copper-dependent quercetin 2,3-dioxygenase.

Authors:  Roberto A Steiner; Kor H Kalk; Bauke W Dijkstra
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-16       Impact factor: 11.205

6.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

Review 7.  Oxygenases without requirement for cofactors or metal ions.

Authors:  S Fetzner
Journal:  Appl Microbiol Biotechnol       Date:  2002-10-12       Impact factor: 4.813

8.  Dioxygenases without requirement for cofactors and their chemical model reaction: compulsory order ternary complex mechanism of 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase involving general base catalysis by histidine 251 and single-electron oxidation of the substrate dianion.

Authors:  Ursula Frerichs-Deeken; Kalina Ranguelova; Reinhard Kappl; Jürgen Hüttermann; Susanne Fetzner
Journal:  Biochemistry       Date:  2004-11-16       Impact factor: 3.162

9.  Bacterial 2,4-dioxygenases: new members of the alpha/beta hydrolase-fold superfamily of enzymes functionally related to serine hydrolases.

Authors:  F Fischer; S Künne; S Fetzner
Journal:  J Bacteriol       Date:  1999-09       Impact factor: 3.490

10.  Crystallization and diffraction data of 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase: a cofactor-free oxygenase of the alpha/beta-hydrolase family.

Authors:  Ruhu Qi; Susanne Fetzner; Aaron J Oakley
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-04-06
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  4 in total

1.  Pseudomonas 2007.

Authors:  Joanna B Goldberg; Robert E W Hancock; Rebecca E Parales; Joyce Loper; Pierre Cornelis
Journal:  J Bacteriol       Date:  2007-12-28       Impact factor: 3.490

2.  Structural basis for cofactor-independent dioxygenation of N-heteroaromatic compounds at the alpha/beta-hydrolase fold.

Authors:  Roberto A Steiner; Helge J Janssen; Pietro Roversi; Aaron J Oakley; Susanne Fetzner
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-22       Impact factor: 11.205

3.  Crystallization and diffraction data of 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase: a cofactor-free oxygenase of the alpha/beta-hydrolase family.

Authors:  Ruhu Qi; Susanne Fetzner; Aaron J Oakley
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-04-06

4.  Origin of the proton-transfer step in the cofactor-free (1H)-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase: effect of the basicity of an active site His residue.

Authors:  Aitor Hernandez-Ortega; Matthew G Quesne; Soi Bui; Dominic P H M Heuts; Roberto A Steiner; Derren J Heyes; Sam P de Visser; Nigel S Scrutton
Journal:  J Biol Chem       Date:  2014-01-30       Impact factor: 5.157

  4 in total

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