Literature DB >> 17565175

Crystallization and diffraction data of 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase: a cofactor-free oxygenase of the alpha/beta-hydrolase family.

Ruhu Qi1, Susanne Fetzner, Aaron J Oakley.   

Abstract

1H-3-Hydroxy-4-oxoquinoline 2,4-dioxygenase (QDO) from Pseudomonas putida 33/1 catalyses the oxygenolysis of 1H-3-hydroxy-4-oxoquinoline to form N-formylanthranilic acid and carbon monoxide without the aid of cofactors. Both N-terminally His6-tagged and native QDO were overexpressed in Escherichia coli and purified by conventional chromatographic procedures. Untagged QDO, but not His6-tagged QDO, was crystallized by the vapour-diffusion method, giving hexagonal bipyramid crystals belonging to space group P6(1)22. Selenomethionine-containing native QDO was prepared and crystallized under identical conditions. The unit-cell parameters were a = b = 90.1, c = 168.6 A, alpha = beta = 90, gamma = 120 degrees. Using synchrotron radiation, these crystals diffract to 2.5 A. The expression, purification and crystallization of QDO are reported here.

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Year:  2007        PMID: 17565175      PMCID: PMC2335004          DOI: 10.1107/S1744309107013760

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  11 in total

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Authors:  P Heikinheimo; A Goldman; C Jeffries; D L Ollis
Journal:  Structure       Date:  1999-06-15       Impact factor: 5.006

2.  Differential effects of short affinity tags on the crystallization of Pyrococcus furiosus maltodextrin-binding protein.

Authors:  Matthew H Bucher; Artem G Evdokimov; David S Waugh
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-02-21

3.  Site-directed mutagenesis of potential catalytic residues in 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase, and hypothesis on the catalytic mechanism of 2,4-dioxygenolytic ring cleavage.

Authors:  F Fischer; S Fetzner
Journal:  FEMS Microbiol Lett       Date:  2000-09-01       Impact factor: 2.742

4.  HKL-3000: the integration of data reduction and structure solution--from diffraction images to an initial model in minutes.

Authors:  Wladek Minor; Marcin Cymborowski; Zbyszek Otwinowski; Maksymilian Chruszcz
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-07-18

5.  Crystallization and preliminary X-ray analysis of 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase from Arthrobacter nitroguajacolicus Rü61a: a cofactor-devoid dioxygenase of the alpha/beta-hydrolase-fold superfamily.

Authors:  Roberto A Steiner; Ursula Frerichs-Deeken; Susanne Fetzner
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-04-06

Review 6.  Oxygenases without requirement for cofactors or metal ions.

Authors:  S Fetzner
Journal:  Appl Microbiol Biotechnol       Date:  2002-10-12       Impact factor: 4.813

7.  Dioxygenases without requirement for cofactors and their chemical model reaction: compulsory order ternary complex mechanism of 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase involving general base catalysis by histidine 251 and single-electron oxidation of the substrate dianion.

Authors:  Ursula Frerichs-Deeken; Kalina Ranguelova; Reinhard Kappl; Jürgen Hüttermann; Susanne Fetzner
Journal:  Biochemistry       Date:  2004-11-16       Impact factor: 3.162

8.  Crystallization and preliminary X-ray diffraction study of the histidine-containing phosphotransfer protein ZmHP1 from maize.

Authors:  Hajime Sugawara; Tomoyuki Yamaya; Hitoshi Sakakibara
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-03-12

9.  Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin.

Authors:  G D Van Duyne; R F Standaert; P A Karplus; S L Schreiber; J Clardy
Journal:  J Mol Biol       Date:  1993-01-05       Impact factor: 5.469

10.  The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data.

Authors:  Helen Berman; Kim Henrick; Haruki Nakamura; John L Markley
Journal:  Nucleic Acids Res       Date:  2006-11-16       Impact factor: 16.971

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  4 in total

1.  Crystallization and preliminary X-ray analysis of 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase from Arthrobacter nitroguajacolicus Rü61a: a cofactor-devoid dioxygenase of the alpha/beta-hydrolase-fold superfamily.

Authors:  Roberto A Steiner; Ursula Frerichs-Deeken; Susanne Fetzner
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-04-06

2.  Pseudomonas 2007.

Authors:  Joanna B Goldberg; Robert E W Hancock; Rebecca E Parales; Joyce Loper; Pierre Cornelis
Journal:  J Bacteriol       Date:  2007-12-28       Impact factor: 3.490

3.  Structural basis for cofactor-independent dioxygenation of N-heteroaromatic compounds at the alpha/beta-hydrolase fold.

Authors:  Roberto A Steiner; Helge J Janssen; Pietro Roversi; Aaron J Oakley; Susanne Fetzner
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-22       Impact factor: 11.205

4.  Ethyl 4-(3-hydroxy-phen-yl)-2,7,7-trimethyl-5-oxo-1,4,5,6,7,8-hexa-hydro-quinoline-3-carboxyl-ate.

Authors:  P Mookiah; K Rajesh; T Narasimhamurthy; V Vijayakumar; N Srinivasan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-07
  4 in total

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