Literature DB >> 14646134

Breaking good resolutions with ARP/wARP.

Richard J Morris1, Petrus H Zwart, Serge Cohen, Francisco J Fernandez, Mattheos Kakaris, Olga Kirillova, Clemens Vonrhein, Anastassis Perrakis, Victor S Lamzin.   

Abstract

New procedures are outlined that enable ARP/wARP to automatically build protein models with diffraction data extending to about 2.5 A. An overview of ongoing research is given and possible future advances are discussed.

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Year:  2003        PMID： 14646134     DOI： 10.1107/s090904950302394x

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN： 0909-0495            Impact factor:   2.616


  72 in total

1.  Crystallization and crystallographic analysis of the ligand-binding domain of the Pseudomonas putida chemoreceptor McpS in complex with malate and succinate.

Authors:  J A Gavira; J Lacal; J L Ramos; J M García-Ruiz; T Krell; E Pineda-Molina
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-03-27

2.  Crystallization and preliminary X-ray crystallographic analysis of the tetracycline-degrading monooxygenase TetX2 from Bacteroides thetaiotaomicron.

Authors:  Gesa Volkers; Linda Schuldt; Gottfried J Palm; Gerard D Wright; Winfried Hinrichs
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-04-30

3.  Evolution of substrate specificity within a diverse family of beta/alpha-barrel-fold basic amino acid decarboxylases: X-ray structure determination of enzymes with specificity for L-arginine and carboxynorspermidine.

Authors:  Xiaoyi Deng; Jeongmi Lee; Anthony J Michael; Diana R Tomchick; Elizabeth J Goldsmith; Margaret A Phillips
Journal:  J Biol Chem       Date:  2010-06-08       Impact factor: 5.157

4.  Crystal structure of Bacillus subtilis SPP1 phage gp22 shares fold similarity with a domain of lactococcal phage p2 RBP.

Authors:  David Veesler; Stéphanie Blangy; Silvia Spinelli; Paulo Tavares; Valérie Campanacci; Christian Cambillau
Journal:  Protein Sci       Date:  2010-07       Impact factor: 6.725

5.  Glutathione transferases of Phanerochaete chrysosporium: S-glutathionyl-p-hydroquinone reductase belongs to a new structural class.

Authors:  Edgar Meux; Pascalita Prosper; Andrew Ngadin; Claude Didierjean; Mélanie Morel; Stéphane Dumarçay; Tiphaine Lamant; Jean-Pierre Jacquot; Frédérique Favier; Eric Gelhaye
Journal:  J Biol Chem       Date:  2010-12-22       Impact factor: 5.157

6.  Structure of a putative trans-editing enzyme for prolyl-tRNA synthetase from Aeropyrum pernix K1 at 1.7 A resolution.

Authors:  Kazutaka Murayama; Miyuki Kato-Murayama; Kazushige Katsura; Tomomi Uchikubo-Kamo; Machiko Yamaguchi-Hirafuji; Masahito Kawazoe; Ryogo Akasaka; Kyoko Hanawa-Suetsugu; Chie Hori-Takemoto; Takaho Terada; Mikako Shirouzu; Shigeyuki Yokoyama
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2004-12-24

7.  The structure of Rauvolfia serpentina strictosidine synthase is a novel six-bladed beta-propeller fold in plant proteins.

Authors:  Xueyan Ma; Santosh Panjikar; Juergen Koepke; Elke Loris; Joachim Stöckigt
Journal:  Plant Cell       Date:  2006-03-10       Impact factor: 11.277

8.  Crystallization and preliminary X-ray analysis of 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase from Arthrobacter nitroguajacolicus Rü61a: a cofactor-devoid dioxygenase of the alpha/beta-hydrolase-fold superfamily.

Authors:  Roberto A Steiner; Ursula Frerichs-Deeken; Susanne Fetzner
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-04-06

9.  Localization and structure of the ankyrin-binding site on beta2-spectrin.

Authors:  Lydia Davis; Khadar Abdi; Mischa Machius; Chad Brautigam; Diana R Tomchick; Vann Bennett; Peter Michaely
Journal:  J Biol Chem       Date:  2008-12-20       Impact factor: 5.157

10.  Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7.

Authors:  Gerrit Langer; Serge X Cohen; Victor S Lamzin; Anastassis Perrakis
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491
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