Literature DB >> 17564431

How protein surfaces induce anomalous dynamics of hydration water.

Francesco Pizzitutti1, Massimo Marchi, Fabio Sterpone, Peter J Rossky.   

Abstract

Water around biomolecules slows down with respect to pure water, and both rotation and translation exhibit anomalous time dependence in the hydration shell. The origin of such behavior remains elusive. We use molecular dynamics simulations of water dynamics around several designed protein models to establish the connection between the appearance of the anomalous dynamics and water-protein interactions. For the first time we quantify the separate effect of protein topological and energetic disorder on the hydration water dynamics. When a static protein structure is simulated, we show that both types of disorder contribute to slow down water diffusion, and that allowing for protein motion, increasing the spatial dimensionality of the interface, reduces the anomalous character of hydration water. The rotation of water is, instead, altered by the energetic disorder only; indeed, when electrostatic interactions between the protein and water are switched off, water reorients even faster than in the bulk. The dynamics of water is also related to the collective structure--à voir the hydrogen bond (H-bond) network--formed by the solvent enclosing the protein surface. We show that, as expected for a full hydrated protein, when the protein surface offers pinning sites (charged or polar sites), the superficial water-water H-bond network percolates throughout the whole surface, hindering the water diffusion, whereas it does not when the protein surface lacks electrostatic interactions with water and the water diffusion is enhanced.

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Year:  2007        PMID: 17564431     DOI: 10.1021/jp0717185

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  28 in total

1.  Site-specific hydration dynamics of globular proteins and the role of constrained water in solvent exchange with amphiphilic cosolvents.

Authors:  John T King; Evan J Arthur; Charles L Brooks; Kevin J Kubarych
Journal:  J Phys Chem B       Date:  2012-05-07       Impact factor: 2.991

2.  Hydration dynamics in a partially denatured ensemble of the globular protein human alpha-lactalbumin investigated with molecular dynamics simulations.

Authors:  Neelanjana Sengupta; Simon Jaud; Douglas J Tobias
Journal:  Biophys J       Date:  2008-09-05       Impact factor: 4.033

3.  Dynamics at the protein-water interface from 17O spin relaxation in deeply supercooled solutions.

Authors:  Carlos Mattea; Johan Qvist; Bertil Halle
Journal:  Biophys J       Date:  2008-06-27       Impact factor: 4.033

4.  Transport properties of water at functionalized molecular interfaces.

Authors:  Jun Feng; Ka-Yiu Wong; Kippi Dyer; B Montgomery Pettitt
Journal:  J Chem Phys       Date:  2009-09-28       Impact factor: 3.488

5.  Hydrogen Bond Network of Water around Protein Investigated with Terahertz and Infrared Spectroscopy.

Authors:  Keiichiro Shiraga; Yuichi Ogawa; Naoshi Kondo
Journal:  Biophys J       Date:  2016-12-20       Impact factor: 4.033

6.  Pressure effects on collective density fluctuations in water and protein solutions.

Authors:  Daniela Russo; Alessio Laloni; Alessandra Filabozzi; Matthias Heyden
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-09       Impact factor: 11.205

7.  Real-space analysis of radiation-induced specific changes with independent component analysis.

Authors:  Dominika Borek; Raquel Bromberg; Johan Hattne; Zbyszek Otwinowski
Journal:  J Synchrotron Radiat       Date:  2018-02-22       Impact factor: 2.616

8.  Anomalous behavior of water inside the SecY translocon.

Authors:  Sara Capponi; Matthias Heyden; Ana-Nicoleta Bondar; Douglas J Tobias; Stephen H White
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-02       Impact factor: 11.205

9.  Probing the structure and dynamics of confined water in AOT reverse micelles.

Authors:  Anna Victoria Martinez; Laura Dominguez; Edyta Małolepsza; Adam Moser; Zack Ziegler; John E Straub
Journal:  J Phys Chem B       Date:  2013-06-06       Impact factor: 2.991

10.  Dimensionality of diffusive exploration at the protein interface in solution.

Authors:  Denis S Grebenkov; Yanina A Goddard; Galina Diakova; Jean-Pierre Korb; Robert G Bryant
Journal:  J Phys Chem B       Date:  2009-10-08       Impact factor: 2.991

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