Literature DB >> 17535894

Internal DNA pressure modifies stability of WT phage.

Irena Ivanovska1, Gijs Wuite, Bengt Jönsson, Alex Evilevitch.   

Abstract

dsDNA in bacteriophages is highly stressed and exerts internal pressures of many atmospheres (1 atm = 101.3 kPa) on the capsid walls. We investigate the correlation between packaged DNA length in lambda phage (78-100% of WT DNA) and capsid strength by using an atomic force microscope indentation technique. We show that phages with WT DNA are twice as strong as shorter genome mutants, which behave like empty capsids, regardless of high internal pressure. Our analytical model of DNA-filled capsid deformation shows that, because of DNA-hydrating water molecules, an osmotic pressure exists inside capsids that increases exponentially when the packaged DNA density is close to WT phage. This osmotic pressure raises the WT capsid strength and is approximately equal to the maximum breaking force of empty shells. This result suggests that the strength of the shells limits the maximal packaged genome length. Moreover, it implies an evolutionary optimization of WT phages allowing them to survive greater external mechanical stresses in nature.

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Year:  2007        PMID: 17535894      PMCID: PMC1887591          DOI: 10.1073/pnas.0703166104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  28 in total

1.  DNA packaging and ejection forces in bacteriophage.

Authors:  J Kindt; S Tzlil; A Ben-Shaul; W M Gelbart
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-13       Impact factor: 11.205

2.  Mechanics of DNA packaging in viruses.

Authors:  Prashant K Purohit; Jané Kondev; Rob Phillips
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-10       Impact factor: 11.205

3.  Forces and pressures in DNA packaging and release from viral capsids.

Authors:  Shelly Tzlil; James T Kindt; William M Gelbart; Avinoam Ben-Shaul
Journal:  Biophys J       Date:  2003-03       Impact factor: 4.033

4.  Bacterial adhesion to target cells enhanced by shear force.

Authors:  Wendy E Thomas; Elena Trintchina; Manu Forero; Viola Vogel; Evgeni V Sokurenko
Journal:  Cell       Date:  2002-06-28       Impact factor: 41.582

5.  Osmotic shock and the strength of viral capsids.

Authors:  Amado Cordova; Markus Deserno; William M Gelbart; Avinoam Ben-Shaul
Journal:  Biophys J       Date:  2003-07       Impact factor: 4.033

6.  Osmotic pressure inhibition of DNA ejection from phage.

Authors:  Alex Evilevitch; Laurence Lavelle; Charles M Knobler; Eric Raspaud; William M Gelbart
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-24       Impact factor: 11.205

7.  Bacteriophage capsids: tough nanoshells with complex elastic properties.

Authors:  I L Ivanovska; P J de Pablo; B Ibarra; G Sgalari; F C MacKintosh; J L Carrascosa; C F Schmidt; G J L Wuite
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-07       Impact factor: 11.205

8.  Multiple steps during the interaction between coliphage lambda and its receptor protein in vitro.

Authors:  M Roa; D Scandella
Journal:  Virology       Date:  1976-07-01       Impact factor: 3.616

9.  The bacteriophage straight phi29 portal motor can package DNA against a large internal force.

Authors:  D E Smith; S J Tans; S B Smith; S Grimes; D L Anderson; C Bustamante
Journal:  Nature       Date:  2001-10-18       Impact factor: 49.962

10.  Isolation of the bacteriophage lambda receptor from Escherichia coli.

Authors:  L Randall-Hazelbauer; M Schwartz
Journal:  J Bacteriol       Date:  1973-12       Impact factor: 3.490

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  56 in total

1.  Mechanics of bacteriophage maturation.

Authors:  Wouter H Roos; Ilya Gertsman; Eric R May; Charles L Brooks; John E Johnson; Gijs J L Wuite
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

2.  Squeezing protein shells: how continuum elastic models, molecular dynamics simulations, and experiments coalesce at the nanoscale.

Authors:  W H Roos; M M Gibbons; A Arkhipov; C Uetrecht; N R Watts; P T Wingfield; A C Steven; A J R Heck; K Schulten; W S Klug; G J L Wuite
Journal:  Biophys J       Date:  2010-08-09       Impact factor: 4.033

Review 3.  Sampling protein form and function with the atomic force microscope.

Authors:  Marian Baclayon; Wouter H Roos; Gijs J L Wuite
Journal:  Mol Cell Proteomics       Date:  2010-06-18       Impact factor: 5.911

4.  Bending and puncturing the influenza lipid envelope.

Authors:  Sai Li; Frederic Eghiaian; Christian Sieben; Andreas Herrmann; Iwan A T Schaap
Journal:  Biophys J       Date:  2011-02-02       Impact factor: 4.033

5.  Probing the Link among Genomic Cargo, Contact Mechanics, and Nanoindentation in Recombinant Adeno-Associated Virus 2.

Authors:  Cheng Zeng; Sven Moller-Tank; Aravind Asokan; Bogdan Dragnea
Journal:  J Phys Chem B       Date:  2017-02-14       Impact factor: 2.991

6.  Effects of salt concentrations and bending energy on the extent of ejection of phage genomes.

Authors:  Alex Evilevitch; Li Tai Fang; Aron M Yoffe; Martin Castelnovo; Donald C Rau; V Adrian Parsegian; William M Gelbart; Charles M Knobler
Journal:  Biophys J       Date:  2007-09-21       Impact factor: 4.033

7.  Manipulation of the mechanical properties of a virus by protein engineering.

Authors:  Carolina Carrasco; Milagros Castellanos; Pedro J de Pablo; Mauricio G Mateu
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-11       Impact factor: 11.205

Review 8.  Probing nanomechanical properties from biomolecules to living cells.

Authors:  S Kasas; G Dietler
Journal:  Pflugers Arch       Date:  2008-01-22       Impact factor: 3.657

9.  Modeling and simulation of the mechanical response from nanoindentation test of DNA-filled viral capsids.

Authors:  Aylin Ahadi; Dan Johansson; Alex Evilevitch
Journal:  J Biol Phys       Date:  2013-03-02       Impact factor: 1.365

10.  Structural transitions and energy landscape for Cowpea Chlorotic Mottle Virus capsid mechanics from nanomanipulation in vitro and in silico.

Authors:  Olga Kononova; Joost Snijder; Melanie Brasch; Jeroen Cornelissen; Ruxandra I Dima; Kenneth A Marx; Gijs J L Wuite; Wouter H Roos; Valeri Barsegov
Journal:  Biophys J       Date:  2013-10-15       Impact factor: 4.033

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