Literature DB >> 18334651

Manipulation of the mechanical properties of a virus by protein engineering.

Carolina Carrasco1, Milagros Castellanos, Pedro J de Pablo, Mauricio G Mateu.   

Abstract

In a previous study, we showed that the DNA molecule within a spherical virus (the minute virus of mice) plays an architectural role by anisotropically increasing the mechanical stiffness of the virus. A finite element model predicted that this mechanical reinforcement is a consequence of the interaction between crystallographically visible, short DNA patches and the inner capsid wall. We have now tested this model by using protein engineering. Selected amino acid side chains have been truncated to specifically remove major interactions between the capsid and the visible DNA patches, and the effect of the mutations on the stiffness of virus particles has been measured using atomic force microscopy. The mutations do not affect the stiffness of the empty capsid; however, they significantly reduce the difference in stiffness between the DNA-filled virion and the empty capsid. The results (i) reveal that intermolecular interactions between individual chemical groups contribute to the mechanical properties of a supramolecular assembly and (ii) identify specific protein-DNA interactions as the origin of the anisotropic increase in the rigidity of a virus. This study also demonstrates that it is possible to control the mechanical properties of a protein nanoparticle by the rational application of protein engineering based on a mechanical model.

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Year:  2008        PMID: 18334651      PMCID: PMC2393779          DOI: 10.1073/pnas.0708017105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  48 in total

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2.  WHAT IF: a molecular modeling and drug design program.

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4.  Internal DNA pressure modifies stability of WT phage.

Authors:  Irena Ivanovska; Gijs Wuite; Bengt Jönsson; Alex Evilevitch
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5.  Controlled conformational transitions in the MVM virion expose the VP1 N-terminus and viral genome without particle disassembly.

Authors:  S F Cotmore; A M D'abramo; C M Ticknor; P Tattersall
Journal:  Virology       Date:  1999-02-01       Impact factor: 3.616

6.  Protein-RNA interactions and virus stability as probed by the dynamics of tryptophan side chains.

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7.  Transcriptional inhibition of the parvovirus minute virus of mice by constitutive expression of an antisense RNA targeted against the NS-1 transactivator protein.

Authors:  J C Ramírez; J F Santarén; J M Almendral
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Authors:  S B Larson; S Koszelak; J Day; A Greenwood; J A Dodds; A McPherson
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10.  Functional implications of the structure of the murine parvovirus, minute virus of mice.

Authors:  M Agbandje-McKenna; A L Llamas-Saiz; F Wang; P Tattersall; M G Rossmann
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  34 in total

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2.  Probing the Link among Genomic Cargo, Contact Mechanics, and Nanoindentation in Recombinant Adeno-Associated Virus 2.

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3.  The capillarity of nanometric water menisci confined inside closed-geometry viral cages.

Authors:  C Carrasco; M Douas; R Miranda; M Castellanos; P A Serena; J L Carrascosa; M G Mateu; M I Marqués; P J de Pablo
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4.  Depletion of virion-associated divalent cations induces parvovirus minute virus of mice to eject its genome in a 3'-to-5' direction from an otherwise intact viral particle.

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5.  Built-in mechanical stress in viral shells.

Authors:  C Carrasco; A Luque; M Hernando-Pérez; R Miranda; J L Carrascosa; P A Serena; M de Ridder; A Raman; J Gómez-Herrero; I A T Schaap; D Reguera; P J de Pablo
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6.  Mechanical elasticity as a physical signature of conformational dynamics in a virus particle.

Authors:  Milagros Castellanos; Rebeca Pérez; Carolina Carrasco; Mercedes Hernando-Pérez; Julio Gómez-Herrero; Pedro J de Pablo; Mauricio G Mateu
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-12       Impact factor: 11.205

7.  Swelling and softening of the cowpea chlorotic mottle virus in response to pH shifts.

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8.  Mechanical disassembly of single virus particles reveals kinetic intermediates predicted by theory.

Authors:  Milagros Castellanos; Rebeca Pérez; Pablo J P Carrillo; Pedro J de Pablo; Mauricio G Mateu
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9.  Evidence for the failure of adeno-associated virus serotype 5 to package a viral genome > or = 8.2 kb.

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10.  Cargo-shell and cargo-cargo couplings govern the mechanics of artificially loaded virus-derived cages.

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