Literature DB >> 22308333

Mechanics of bacteriophage maturation.

Wouter H Roos1, Ilya Gertsman, Eric R May, Charles L Brooks, John E Johnson, Gijs J L Wuite.   

Abstract

Capsid maturation with large-scale subunit reorganization occurs in virtually all viruses that use a motor to package nucleic acid into preformed particles. A variety of ensemble studies indicate that the particles gain greater stability during this process, however, it is unknown which material properties of the fragile procapsids change. Using Atomic Force Microscopy-based nano-indentation, we study the development of the mechanical properties during maturation of bacteriophage HK97, a λ-like phage of which the maturation-induced morphological changes are well described. We show that mechanical stabilization and strengthening occurs in three independent ways: (i) an increase of the Young's modulus, (ii) a strong rise of the capsid's ultimate strength, and (iii) a growth of the resistance against material fatigue. The Young's modulus of immature and mature capsids, as determined from thin shell theory, fit with the values calculated using a new multiscale simulation approach. This multiscale calculation shows that the increase in Young's modulus isn't dependent on the crosslinking between capsomers. In contrast, the ultimate strength of the capsids does increase even when a limited number of cross-links are formed while full crosslinking appears to protect the shell against material fatigue. Compared to phage λ, the covalent crosslinking at the icosahedral and quasi threefold axes of HK97 yields a mechanically more robust particle than the addition of the gpD protein during maturation of phage λ. These results corroborate the expected increase in capsid stability and strength during maturation, however in an unexpected intricate way, underlining the complex structure of these self-assembling nanocontainers.

Entities:  

Mesh:

Year:  2012        PMID: 22308333      PMCID: PMC3289345          DOI: 10.1073/pnas.1109590109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  44 in total

1.  Virus maturation involving large subunit rotations and local refolding.

Authors:  J F Conway; W R Wikoff; N Cheng; R L Duda; R W Hendrix; J E Johnson; A C Steven
Journal:  Science       Date:  2001-04-27       Impact factor: 47.728

2.  Building-block approach for determining low-frequency normal modes of macromolecules.

Authors:  F Tama; F X Gadea; O Marques; Y H Sanejouand
Journal:  Proteins       Date:  2000-10-01

3.  Virus Particle Explorer (VIPER), a website for virus capsid structures and their computational analyses.

Authors:  V S Reddy; P Natarajan; B Okerberg; K Li; K V Damodaran; R T Morton; C L Brooks; J E Johnson
Journal:  J Virol       Date:  2001-12       Impact factor: 5.103

Review 4.  Imaging of viruses by atomic force microscopy.

Authors:  Yu G Kuznetsov; A J Malkin; R W Lucas; M Plomp; A McPherson
Journal:  J Gen Virol       Date:  2001-09       Impact factor: 3.891

5.  Bacteriophage capsids: tough nanoshells with complex elastic properties.

Authors:  I L Ivanovska; P J de Pablo; B Ibarra; G Sgalari; F C MacKintosh; J L Carrascosa; C F Schmidt; G J L Wuite
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-07       Impact factor: 11.205

6.  Control of crosslinking by quaternary structure changes during bacteriophage HK97 maturation.

Authors:  Lu Gan; James F Conway; Brian A Firek; Naiqian Cheng; Roger W Hendrix; Alasdair C Steven; John E Johnson; Robert L Duda
Journal:  Mol Cell       Date:  2004-06-04       Impact factor: 17.970

7.  Viral capsid equilibrium dynamics reveals nonuniform elastic properties.

Authors:  Eric R May; Ankush Aggarwal; William S Klug; Charles L Brooks
Journal:  Biophys J       Date:  2011-06-08       Impact factor: 4.033

8.  The bacteriophage straight phi29 portal motor can package DNA against a large internal force.

Authors:  D E Smith; S J Tans; S B Smith; S Grimes; D L Anderson; C Bustamante
Journal:  Nature       Date:  2001-10-18       Impact factor: 49.962

9.  Generalized born model with a simple smoothing function.

Authors:  Wonpil Im; Michael S Lee; Charles L Brooks
Journal:  J Comput Chem       Date:  2003-11-15       Impact factor: 3.376

10.  Host range, immunity and antigenic properties of lambdoid coliphage HK97.

Authors:  E K Dhillon; T S Dhillon; A N Lai; S Linn
Journal:  J Gen Virol       Date:  1980-09       Impact factor: 3.891

View more
  33 in total

1.  On the morphology of viral capsids: elastic properties and buckling transitions.

Authors:  Eric R May; Charles L Brooks
Journal:  J Phys Chem B       Date:  2012-03-27       Impact factor: 2.991

2.  Exploring the symmetry and mechanism of virus capsid maturation via an ensemble of pathways.

Authors:  Eric R May; Jun Feng; Charles L Brooks
Journal:  Biophys J       Date:  2012-02-07       Impact factor: 4.033

3.  Modeling Viral Capsid Assembly.

Authors:  Michael F Hagan
Journal:  Adv Chem Phys       Date:  2014       Impact factor: 1.000

4.  Modeling and simulation of the mechanical response from nanoindentation test of DNA-filled viral capsids.

Authors:  Aylin Ahadi; Dan Johansson; Alex Evilevitch
Journal:  J Biol Phys       Date:  2013-03-02       Impact factor: 1.365

5.  Structural transitions and energy landscape for Cowpea Chlorotic Mottle Virus capsid mechanics from nanomanipulation in vitro and in silico.

Authors:  Olga Kononova; Joost Snijder; Melanie Brasch; Jeroen Cornelissen; Ruxandra I Dima; Kenneth A Marx; Gijs J L Wuite; Wouter H Roos; Valeri Barsegov
Journal:  Biophys J       Date:  2013-10-15       Impact factor: 4.033

6.  Synonymous mutations reduce genome compactness in icosahedral ssRNA viruses.

Authors:  Luca Tubiana; Anže Lošdorfer Božič; Cristian Micheletti; Rudolf Podgornik
Journal:  Biophys J       Date:  2015-01-06       Impact factor: 4.033

Review 7.  Gene Transfer Agents in Symbiotic Microbes.

Authors:  Steen Christensen; Laura R Serbus
Journal:  Results Probl Cell Differ       Date:  2020

Review 8.  Confessions of an icosahedral virus crystallographer.

Authors:  John E Johnson
Journal:  Microscopy (Oxf)       Date:  2013-01-04       Impact factor: 1.571

9.  Integrin and defensin modulate the mechanical properties of adenovirus.

Authors:  Joost Snijder; Vijay S Reddy; Eric R May; Wouter H Roos; Glen R Nemerow; Gijs J L Wuite
Journal:  J Virol       Date:  2012-12-26       Impact factor: 5.103

10.  The role of capsid maturation on adenovirus priming for sequential uncoating.

Authors:  Ana J Pérez-Berná; Alvaro Ortega-Esteban; Rosa Menéndez-Conejero; Dennis C Winkler; Margarita Menéndez; Alasdair C Steven; S Jane Flint; Pedro J de Pablo; Carmen San Martín
Journal:  J Biol Chem       Date:  2012-07-12       Impact factor: 5.157

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.