Literature DB >> 23585708

Two-Dimensional Stimulated Ultraviolet Resonance Raman Spectra of Tyrosine and Tryptophan; A Simulation Study.

Hao Ren1, Jason D Biggs, Shaul Mukamel.   

Abstract

We report an ab-initio simulation study of the ultrafast broad bandwidth ultraviolet (UV) stimulated resonance Raman spectra (SRRS) of L-tyrosine, L-tryptophan and trans-L-tryptophan-L-tyrosine (WY) dipeptide. Two-pulse one-dimensional (1D) SRRS and three-pulse 2D SRRS that reveal inter- and intra-residue vibrational coorelations are simulated using electronically resonant or preresonant pulse configurations that select the Raman signal and discriminate against excited state pathways. Multimode effects are incorporated via the cumulant expansion. The 2D SRRS technique is more sensitive to residue couplings than spontaneous Raman.

Entities:  

Year:  2013        PMID: 23585708      PMCID: PMC3622277          DOI: 10.1002/jrs.4210

Source DB:  PubMed          Journal:  J Raman Spectrosc        ISSN: 0377-0486            Impact factor:   3.133


  26 in total

1.  Generalized Gradient Approximation Made Simple.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-10-28       Impact factor: 9.161

2.  Ultrabroadband femtosecond two-dimensional ultraviolet transient absorption.

Authors:  Gerald Auböck; Cristina Consani; Frank van Mourik; Majed Chergui
Journal:  Opt Lett       Date:  2012-06-15       Impact factor: 3.776

3.  Coherent nonlinear optical studies of elementary processes in biological complexes: diagrammatic techniques based on the wave function versus the density matrix.

Authors:  Jason D Biggs; Judith A Voll; Shaul Mukamel
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2012-08-13       Impact factor: 4.226

4.  Structural variations in the cross-beta core of amyloid beta fibrils revealed by deep UV resonance Raman spectroscopy.

Authors:  Ludmila A Popova; Ravindra Kodali; Ronald Wetzel; Igor K Lednev
Journal:  J Am Chem Soc       Date:  2010-05-12       Impact factor: 15.419

5.  Two-dimensional ultrafast fourier transform spectroscopy in the deep ultraviolet.

Authors:  Chien-hung Tseng; Spiridoula Matsika; Thomas C Weinacht
Journal:  Opt Express       Date:  2009-10-12       Impact factor: 3.894

6.  UVRR spectroscopic studies of valinomycin complex formation in different solvents.

Authors:  Abdil Ozdemir; Igor K Lednev; Sanford A Asher
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2005-01-01       Impact factor: 4.098

7.  Femtosecond time-resolved stimulated Raman reveals the birth of bacteriorhodopsin's J and K intermediates.

Authors:  Sangdeok Shim; Jyotishman Dasgupta; Richard A Mathies
Journal:  J Am Chem Soc       Date:  2009-06-10       Impact factor: 15.419

8.  Two-dimensional near-ultraviolet spectroscopy of aromatic residues in amyloid fibrils: a first principles study.

Authors:  Jun Jiang; Shaul Mukamel
Journal:  Phys Chem Chem Phys       Date:  2010-12-06       Impact factor: 3.676

9.  Primary protein response after ligand photodissociation in carbonmonoxy myoglobin.

Authors:  Akira Sato; Ying Gao; Teizo Kitagawa; Yasuhisa Mizutani
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-21       Impact factor: 11.205

10.  Peptide secondary structure folding reaction coordinate: correlation between uv raman amide III frequency, Psi Ramachandran angle, and hydrogen bonding.

Authors:  Aleksandr V Mikhonin; Sergei V Bykov; Nataliya S Myshakina; Sanford A Asher
Journal:  J Phys Chem B       Date:  2006-02-02       Impact factor: 2.991

View more
  5 in total

1.  Two-dimensional stimulated resonance Raman spectroscopy study of the Trp-cage peptide folding.

Authors:  Hao Ren; Zaizhi Lai; Jason D Biggs; Jin Wang; Shaul Mukamel
Journal:  Phys Chem Chem Phys       Date:  2013-11-28       Impact factor: 3.676

2.  Multiple Core and Vibronic Coupling Effects in Attosecond Stimulated X-Ray Raman Spectroscopy (SXRS).

Authors:  Weijie Hua; Jason D Biggs; Yu Zhang; Daniel Healion; Hao Ren; Shaul Mukamel
Journal:  J Chem Theory Comput       Date:  2013-12-10       Impact factor: 6.006

3.  Simulations of Two-dimensional Infrared and Stimulated Resonance Raman Spectra of Photoactive Yellow Protein.

Authors:  Nicholas K Preketes; Jason D Biggs; Hao Ren; Ioan Andricioaei; Shaul Mukamel
Journal:  Chem Phys       Date:  2013-08-01       Impact factor: 2.348

4.  Constructing high-accuracy theoretical Raman spectra of SARS-CoV-2 spike proteins based on a large fragment method.

Authors:  Shuang Ni; Qiang Yang; Jinling Huang; Minjie Zhou; Lai Wei; Yue Yang; Jiaxin Wen; Wenbo Mo; Wei Le; Daojian Qi; Lei Jin; Bo Li; Zongqin Zhao; Kai Du
Journal:  Chem Phys Lett       Date:  2022-04-30       Impact factor: 2.719

5.  Optical biopsy identification and grading of gliomas using label-free visible resonance Raman spectroscopy.

Authors:  Yan Zhou; Cheng-Hui Liu; Binlin Wu; Xinguang Yu; Gangge Cheng; Ke Zhu; Kai Wang; Chunyuan Zhang; Mingyue Zhao; Rui Zong; Lin Zhang; Lingyan Shi; Robert R Alfano
Journal:  J Biomed Opt       Date:  2019-09       Impact factor: 3.170

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.