Literature DB >> 18661989

Coupling across a DNA helical turn yields a hybrid DNA/organic catenane doubly tailed with functional termini.

Yu Liu1, Akinori Kuzuya, Ruojie Sha, Johan Guillaume, Risheng Wang, James W Canary, Nadrian C Seeman.   

Abstract

We describe the synthesis of a hybrid DNA/organic macrocycle that is prepared by formation of an amide linkage across one full turn of DNA. Formation of a catenane proved that the linkage crossed a turn rather than running along the phosphodiester backbone contour. The product, a doubly tailed catenane, contains 5'- and 3'-termini that can be functionalized further or used to incorporate the catenane structure into other DNA assemblies.

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Year:  2008        PMID: 18661989      PMCID: PMC2712227          DOI: 10.1021/ja8041096

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  17 in total

1.  Peptide nucleic acid-assisted topological labeling of duplex dna.

Authors:  V V Demidov; H Kuhn; I V Lavrentieva-Smolina; M D Frank-Kamenetskii
Journal:  Methods       Date:  2001-02       Impact factor: 3.608

Review 2.  Lariat ether receptor systems show experimental evidence for alkali metal cation-pi interactions.

Authors:  George W Gokel; Leonard J Barbour; Riccardo Ferdani; Jiaxin Hu
Journal:  Acc Chem Res       Date:  2002-10       Impact factor: 22.384

3.  Nylon/DNA: Single-stranded DNA with a covalently stitched nylon lining.

Authors:  Lei Zhu; Philip S Lukeman; James W Canary; Nadrian C Seeman
Journal:  J Am Chem Soc       Date:  2003-08-27       Impact factor: 15.419

4.  DNA tube structures controlled by a four-way-branched DNA connector.

Authors:  Masayuki Endo; Nadrian C Seeman; Tetsuro Majima
Journal:  Angew Chem Int Ed Engl       Date:  2005-09-19       Impact factor: 15.336

5.  Transition metal complexes as molecular machine prototypes.

Authors:  Benoît Champin; Pierre Mobian; Jean-Pierre Sauvage
Journal:  Chem Soc Rev       Date:  2006-11-08       Impact factor: 54.564

6.  Interweaving anion templation.

Authors:  Michael D Lankshear; Paul D Beer
Journal:  Acc Chem Res       Date:  2007-05-25       Impact factor: 22.384

7.  Monitoring single-stranded DNA secondary structure formation by determining the topological state of DNA catenanes.

Authors:  Xingguo Liang; Heiko Kuhn; Maxim D Frank-Kamenetskii
Journal:  Biophys J       Date:  2006-02-03       Impact factor: 4.033

Review 8.  Design, synthesis, and analysis of conformationally constrained nucleic acids.

Authors:  G D Glick
Journal:  Biopolymers       Date:  1998       Impact factor: 2.505

9.  Triplex-directed self-assembly of an artificial sliding clamp on duplex DNA.

Authors:  K Ryan; E T Kool
Journal:  Chem Biol       Date:  1998-02

10.  Template-directed oligonucleotide strand ligation, covalent intramolecular DNA circularization and catenation using click chemistry.

Authors:  Ravindra Kumar; Afaf El-Sagheer; John Tumpane; Per Lincoln; L Marcus Wilhelmsson; Tom Brown
Journal:  J Am Chem Soc       Date:  2007-05-09       Impact factor: 15.419

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  12 in total

Review 1.  Artificial Molecular Machines.

Authors:  Sundus Erbas-Cakmak; David A Leigh; Charlie T McTernan; Alina L Nussbaumer
Journal:  Chem Rev       Date:  2015-09-08       Impact factor: 60.622

2.  Pseudorotaxane formation via the slippage process with chemically cyclized oligonucleotides.

Authors:  Kazumitsu Onizuka; Tomoko Chikuni; Takuya Amemiya; Takuya Miyashita; Kyoko Onizuka; Hiroshi Abe; Fumi Nagatsugi
Journal:  Nucleic Acids Res       Date:  2017-05-19       Impact factor: 16.971

3.  Structural optimization of pseudorotaxane-forming oligonucleotides for efficient and stable complex formation.

Authors:  Kazumitsu Onizuka; Takuya Miyashita; Tomoko Chikuni; Mamiko Ozawa; Hiroshi Abe; Fumi Nagatsugi
Journal:  Nucleic Acids Res       Date:  2018-09-28       Impact factor: 16.971

4.  Solid Phase Stepwise Synthesis of Polyethylene Glycols.

Authors:  Ashok Khanal; Shiyue Fang
Journal:  Chemistry       Date:  2017-10-06       Impact factor: 5.236

5.  Distance dependent interhelical couplings of organic rods incorporated in DNA 4-helix bundles.

Authors:  Casper S Andersen; Martin M Knudsen; Rahul Chhabra; Yan Liu; Hao Yan; Kurt V Gothelf
Journal:  Bioconjug Chem       Date:  2009-07-02       Impact factor: 4.774

6.  Site-specific inter-strand cross-links of DNA duplexes.

Authors:  Miao Ye; Johan Guillaume; Yu Liu; Ruojie Sha; Risheng Wang; Nadrian C Seeman; James W Canary
Journal:  Chem Sci       Date:  2013-03-01       Impact factor: 9.825

7.  Templated synthesis of nylon nucleic acids and characterization by nuclease digestion.

Authors:  Yu Liu; Risheng Wang; Liang Ding; Roujie Sha; Nadrian C Seeman; James W Canary
Journal:  Chem Sci       Date:  2012-03-08       Impact factor: 9.825

8.  Terminal hairpin in oligonucleotide dominantly prioritizes intramolecular cyclization by T4 ligase over intermolecular polymerization: an exclusive methodology for producing ssDNA rings.

Authors:  Yixiao Cui; Xutiange Han; Ran An; Yaping Zhang; Kai Cheng; Xingguo Liang; Makoto Komiyama
Journal:  Nucleic Acids Res       Date:  2018-12-14       Impact factor: 16.971

9.  Linking two DNA duplexes with a rigid linker for DNA nanotechnology.

Authors:  Ryu Tashiro; Masahiro Iwamoto; Hironobu Morinaga; Tomoko Emura; Kumi Hidaka; Masayuki Endo; Hiroshi Sugiyama
Journal:  Nucleic Acids Res       Date:  2015-06-30       Impact factor: 16.971

10.  Powering the programmed nanostructure and function of gold nanoparticles with catenated DNA machines.

Authors:  Johann Elbaz; Alessandro Cecconello; Zhiyuan Fan; Alexander O Govorov; Itamar Willner
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

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