Literature DB >> 27668458

In vitro circularization of RNA.

Sabine Müller1, Bettina Appel1.   

Abstract

Over the past 2 decades, different types of circular RNAs have been discovered in all kingdoms of life, and apparently, those circular species are more abundant than previously thought. Apart from circRNAs in viroids and viruses, circular transcripts have been discovered in rodents more than 20 y ago and recently have been reported to be abundant in many organisms including humans. Their exact function remains still unknown, although one may expect extensive functional studies to follow the currently dominant research into identification and discovery of circRNA by sophisticated sequencing techniques and bioinformatics. Functional studies require models and as such methods for preparation of circRNA in vitro. Here, we will review current protocols for RNA circularization and discuss future prospects in the field.

Entities:  

Keywords:  Chemical ligation; RNA synthesis; circRNA; circularization; enzymatic ligation; in vitro transcription; kinase; ligase; transcription priming

Mesh:

Substances:

Year:  2016        PMID: 27668458      PMCID: PMC5680678          DOI: 10.1080/15476286.2016.1239009

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  83 in total

1.  New strategy for the synthesis of chemically modified RNA constructs exemplified by hairpin and hammerhead ribozymes.

Authors:  Afaf H El-Sagheer; Tom Brown
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-16       Impact factor: 11.205

2.  Optimizing splinted ligation of highly structured small RNAs.

Authors:  Wolfram C Kurschat; Julius Müller; Richard Wombacher; Mark Helm
Journal:  RNA       Date:  2005-10-26       Impact factor: 4.942

3.  RNA self-processing towards changed topology and sequence oligomerization.

Authors:  Stefan Pieper; Stéphanie Vauléon; Sabine Müller
Journal:  Biol Chem       Date:  2007-07       Impact factor: 3.915

4.  In vivo circular RNA production using a constitutive promoter for high-level expression.

Authors:  So Umekage; Yo Kikuchi
Journal:  J Biosci Bioeng       Date:  2009-10       Impact factor: 2.894

Review 5.  Circular RNA: A new star of noncoding RNAs.

Authors:  Shibin Qu; Xisheng Yang; Xiaolei Li; Jianlin Wang; Yuan Gao; Runze Shang; Wei Sun; Kefeng Dou; Haimin Li
Journal:  Cancer Lett       Date:  2015-06-05       Impact factor: 8.679

6.  Detecting and characterizing circular RNAs.

Authors:  William R Jeck; Norman E Sharpless
Journal:  Nat Biotechnol       Date:  2014-05       Impact factor: 54.908

7.  A Novel 5'-Iodonucleoside Allows Efficient Nonenzymatic Ligation of Single-stranded and Duplex DNAs.

Authors:  Yanzheng Xu; Eric T Kool
Journal:  Tetrahedron Lett       Date:  1997-08-11       Impact factor: 2.415

8.  Oligonucleotide circularization by template-directed chemical ligation.

Authors:  N G Dolinnaya; M Blumenfeld; I N Merenkova; T S Oretskaya; N F Krynetskaya; M G Ivanovskaya; M Vasseur; Z A Shabarova
Journal:  Nucleic Acids Res       Date:  1993-11-25       Impact factor: 16.971

9.  Circular intronic long noncoding RNAs.

Authors:  Yang Zhang; Xiao-Ou Zhang; Tian Chen; Jian-Feng Xiang; Qing-Fei Yin; Yu-Hang Xing; Shanshan Zhu; Li Yang; Ling-Ling Chen
Journal:  Mol Cell       Date:  2013-09-12       Impact factor: 17.970

10.  Transcriptome-wide investigation of circular RNAs in rice.

Authors:  Tingting Lu; Lingling Cui; Yan Zhou; Chuanrang Zhu; Danlin Fan; Hao Gong; Qiang Zhao; Congcong Zhou; Yan Zhao; Danfeng Lu; Jianghong Luo; Yongchun Wang; Qilin Tian; Qi Feng; Tao Huang; Bin Han
Journal:  RNA       Date:  2015-10-13       Impact factor: 4.942

View more
  21 in total

Review 1.  Role of circular RNAs in brain development and CNS diseases.

Authors:  Suresh L Mehta; Robert J Dempsey; Raghu Vemuganti
Journal:  Prog Neurobiol       Date:  2020-01-10       Impact factor: 11.685

2.  Phospho-RNA sequencing with circAID-p-seq.

Authors:  Alessia Del Piano; Tea Kecman; Michael Schmid; Ruggero Barbieri; Luciano Brocchieri; Silvia Tornaletti; Claudia Firrito; Luca Minati; Paola Bernabo; Ilaria Signoria; Fabio Lauria; Thomas H Gillingwater; Gabriella Viero; Massimiliano Clamer
Journal:  Nucleic Acids Res       Date:  2022-02-28       Impact factor: 16.971

Review 3.  The emerging roles of circRNAs in cancer and oncology.

Authors:  Lasse S Kristensen; Theresa Jakobsen; Henrik Hager; Jørgen Kjems
Journal:  Nat Rev Clin Oncol       Date:  2021-12-15       Impact factor: 66.675

4.  Preferential production of RNA rings by T4 RNA ligase 2 without any splint through rational design of precursor strand.

Authors:  Hui Chen; Kai Cheng; Xiaoli Liu; Ran An; Makoto Komiyama; Xingguo Liang
Journal:  Nucleic Acids Res       Date:  2020-05-21       Impact factor: 16.971

Review 5.  Best practices to ensure robust investigation of circular RNAs: pitfalls and tips.

Authors:  Samantha Dodbele; Nebibe Mutlu; Jeremy E Wilusz
Journal:  EMBO Rep       Date:  2021-02-25       Impact factor: 8.807

Review 6.  The design and synthesis of circular RNAs.

Authors:  Prisca Obi; Y Grace Chen
Journal:  Methods       Date:  2021-03-02       Impact factor: 3.608

Review 7.  Targeting circular RNAs as a therapeutic approach: current strategies and challenges.

Authors:  Alina T He; Jinglei Liu; Feiya Li; Burton B Yang
Journal:  Signal Transduct Target Ther       Date:  2021-05-21

8.  RNA ligation of very small pseudo nick structures by T4 RNA ligase 2, leading to efficient production of versatile RNA rings.

Authors:  Kai Cheng; Ran An; Yixiao Cui; Yaping Zhang; Xutiange Han; Zhe Sui; Hui Chen; Xingguo Liang; Makoto Komiyama
Journal:  RSC Adv       Date:  2019-03-14       Impact factor: 4.036

9.  Deficiency in the Ubiquitin Conjugating Enzyme UBE2A in Alzheimer's Disease (AD) is Linked to Deficits in a Natural Circular miRNA-7 Sponge (circRNA; ciRS-7).

Authors:  Yuhai Zhao; Peter N Alexandrov; Vivian Jaber; Walter J Lukiw
Journal:  Genes (Basel)       Date:  2016-12-05       Impact factor: 4.096

10.  Circular RNA expression profiles reveal that hsa_circ_0018289 is up-regulated in cervical cancer and promotes the tumorigenesis.

Authors:  Ya-Li Gao; Ming-Yun Zhang; Bo Xu; Li-Jie Han; Shou-Feng Lan; Ju Chen; Yu-Jin Dong; Li-Li Cao
Journal:  Oncotarget       Date:  2017-09-23
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.