Literature DB >> 18391204

A polycatenated DNA scaffold for the one-step assembly of hierarchical nanostructures.

Yossi Weizmann1, Adam B Braunschweig, Ofer I Wilner, Zoya Cheglakov, Itamar Willner.   

Abstract

A unique DNA scaffold was prepared for the one-step self-assembly of hierarchical nanostructures onto which multiple proteins or nanoparticles are positioned on a single template with precise relative spatial orientation. The architecture is a topologically complex ladder-shaped polycatenane in which the "rungs" of the ladder are used to bring together the individual rings of the mechanically interlocked structure, and the "rails" are available for hierarchical assembly, whose effectiveness has been demonstrated with proteins, complementary DNA, and gold nanoparticles. The ability of this template to form from linear monomers and simultaneously bind two proteins was demonstrated by chemical force microscopy, transmission electron microscopy, and confocal fluorescence microscopy. Finally, fluorescence resonance energy transfer between adjacent fluorophores confirmed the programmed spatial arrangement between two different nanomaterials. DNA templates that bring together multiple nanostructures with precise spatial control have applications in catalysis, biosensing, and nanomaterials design.

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Year:  2008        PMID: 18391204      PMCID: PMC2291075          DOI: 10.1073/pnas.0800723105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  38 in total

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Authors:  T Strunz; K Oroszlan; R Schäfer; H J Güntherodt
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

2.  DNA-templated self-assembly of protein and nanoparticle linear arrays.

Authors:  Hanying Li; Sung Ha Park; John H Reif; Thomas H LaBean; Hao Yan
Journal:  J Am Chem Soc       Date:  2004-01-21       Impact factor: 15.419

3.  A two-state DNA lattice switched by DNA nanoactuator.

Authors:  Liping Feng; Sung Ha Park; John H Reif; Hao Yan
Journal:  Angew Chem Int Ed Engl       Date:  2003-09-22       Impact factor: 15.336

Review 4.  Metabolic channeling in plants.

Authors:  Brenda S J Winkel
Journal:  Annu Rev Plant Biol       Date:  2004       Impact factor: 26.379

5.  Sequential self-assembly of a DNA hexagon as a template for the organization of gold nanoparticles.

Authors:  Faisal A Aldaye; Hanadi F Sleiman
Journal:  Angew Chem Int Ed Engl       Date:  2006-03-27       Impact factor: 15.336

6.  Operation of a DNA robot arm inserted into a 2D DNA crystalline substrate.

Authors:  Baoquan Ding; Nadrian C Seeman
Journal:  Science       Date:  2006-12-08       Impact factor: 47.728

7.  Following aptamer-thrombin binding by force measurements.

Authors:  Bernhard Basnar; Roey Elnathan; Itamar Willner
Journal:  Anal Chem       Date:  2006-06-01       Impact factor: 6.986

8.  DNA polymerization on gold nanoparticles through rolling circle amplification: towards novel scaffolds for three-dimensional periodic nanoassemblies.

Authors:  Weian Zhao; Yan Gao; Srinivas A Kandadai; Michael A Brook; Yingfu Li
Journal:  Angew Chem Int Ed Engl       Date:  2006-04-03       Impact factor: 15.336

9.  Direct measurement of the forces between complementary strands of DNA.

Authors:  G U Lee; L A Chrisey; R J Colton
Journal:  Science       Date:  1994-11-04       Impact factor: 47.728

10.  DNA base pair resolution by single molecule force spectroscopy.

Authors:  Bernie D Sattin; Andrew E Pelling; M Cynthia Goh
Journal:  Nucleic Acids Res       Date:  2004-09-14       Impact factor: 16.971

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  16 in total

1.  Self-assembly of DNA nanotubes with controllable diameters.

Authors:  Ofer I Wilner; Ron Orbach; Anja Henning; Carsten Teller; Omer Yehezkeli; Michael Mertig; Daniel Harries; Itamar Willner
Journal:  Nat Commun       Date:  2011-11-15       Impact factor: 14.919

2.  Mechanically interlocked calix[4]arene dimers display reversible bond breakage under force.

Authors:  Matthias Janke; Yuliya Rudzevich; Olena Molokanova; Thorsten Metzroth; Ingo Mey; Gregor Diezemann; Piotr E Marszalek; Jürgen Gauss; Volker Böhmer; Andreas Janshoff
Journal:  Nat Nanotechnol       Date:  2009-02-08       Impact factor: 39.213

3.  Enzyme cascades activated on topologically programmed DNA scaffolds.

Authors:  Ofer I Wilner; Yossi Weizmann; Ron Gill; Oleg Lioubashevski; Ronit Freeman; Itamar Willner
Journal:  Nat Nanotechnol       Date:  2009-03-29       Impact factor: 39.213

4.  RNA nanotechnology for computer design and in vivo computation.

Authors:  Meikang Qiu; Emil Khisamutdinov; Zhengyi Zhao; Cheryl Pan; Jeong-Woo Choi; Neocles B Leontis; Peixuan Guo
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2013-09-02       Impact factor: 4.226

Review 5.  Building plasmonic nanostructures with DNA.

Authors:  Shawn J Tan; Michael J Campolongo; Dan Luo; Wenlong Cheng
Journal:  Nat Nanotechnol       Date:  2011-04-17       Impact factor: 39.213

6.  Large-area spatially ordered arrays of gold nanoparticles directed by lithographically confined DNA origami.

Authors:  Albert M Hung; Christine M Micheel; Luisa D Bozano; Lucas W Osterbur; Greg M Wallraff; Jennifer N Cha
Journal:  Nat Nanotechnol       Date:  2009-12-20       Impact factor: 39.213

7.  Nucleic acid-based nanoengineering: novel structures for biomedical applications.

Authors:  Hanying Li; Thomas H Labean; Kam W Leong
Journal:  Interface Focus       Date:  2011-06-28       Impact factor: 3.906

8.  Facile Characterization of Topology of DNA Catenanes.

Authors:  Lin Li; Ran An; Jiaxuan Tang; Zhe Sui; Guoqing Wang; Makoto Komiyama; Xingguo Liang
Journal:  Biophys J       Date:  2020-02-15       Impact factor: 4.033

9.  A double-stranded DNA rotaxane.

Authors:  Damian Ackermann; Thorsten L Schmidt; Jeffrey S Hannam; Chandra S Purohit; Alexander Heckel; Michael Famulok
Journal:  Nat Nanotechnol       Date:  2010-04-18       Impact factor: 39.213

10.  A bistable poly[2]catenane forms nanosuperstructures.

Authors:  Mark A Olson; Adam B Braunschweig; Lei Fang; Taichi Ikeda; Rafal Klajn; Ali Trabolsi; Paul J Wesson; Diego Benítez; Chad A Mirkin; Bartosz A Grzybowski; J Fraser Stoddart
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

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